| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,013,076 – 13,013,221 |
| Length | 145 |
| Max. P | 0.849789 |
| Location | 13,013,076 – 13,013,221 |
|---|---|
| Length | 145 |
| Sequences | 3 |
| Columns | 148 |
| Reading direction | reverse |
| Mean pairwise identity | 75.29 |
| Shannon entropy | 0.33896 |
| G+C content | 0.54900 |
| Mean single sequence MFE | -45.23 |
| Consensus MFE | -29.71 |
| Energy contribution | -31.38 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13013076 145 - 22422827 --CGAAGGUCAGGGGCUAGUUGUCCCUUGACCUUAGCGUGGCCCGACGUCUUGGCCACUUAAAAACGCUG-GUUGAACCAGCGAAGACUUCUACCUUCACAAUCCCCCUAUUAGCCCGUUUUACCCCACUUUACGGCUCCCAUGACUU --..((((((((((((.....).)))))))))))(((((((((.........))))))...(((((((((-(.....)))))((((........))))...................))))).............))).......... ( -46.80, z-score = -2.87, R) >droSec1.super_21 765019 126 - 1102487 --CGAAGGUCAGCGGCUAGUUGUCCCUUGACCUUAGCGUGGCCCGACGUCUUGGCCACUUAAAAACGAGACGUUGAACUAGCGAAGGCUUCUUCC-------------------CCCGUUUUCCCCCACAUU-UGGCUCCCAUGACUU --..((((((((.(((.....).)).))))))))(((((((.(((((((((((............)))))))))(((..(((....)))..))).-------------------..................-.))...))))).)). ( -37.80, z-score = -1.35, R) >droEre2.scaffold_4690 4888877 139 + 18748788 CACGAAGGUCAGGGGCCGGUUGUCCCUUGACCUUAGCGUGGCCCCGCGUCUUGGCCACUUAAAAACGAGACGUUGACCCACCGAAGGUGGAGGGC---------CCCCUGUGAGCUCCUUUUCCCCUAUUUUUAGGCUUCCAUAACUU (((.(((((((((((.(....).)))))))))))((.(.(((((.((((((((............))))))))....(((((...))))).))))---------).))))))............((((....))))............ ( -51.10, z-score = -1.54, R) >consensus __CGAAGGUCAGGGGCUAGUUGUCCCUUGACCUUAGCGUGGCCCGACGUCUUGGCCACUUAAAAACGAGACGUUGAACCAGCGAAGGCUUCUACC_________CCCCU_U_AGCCCGUUUUCCCCCACUUU_AGGCUCCCAUGACUU ....((((((((((((.....).))))))))))).(.(..(((((((((((((............)))))))))).......((((((.............................))))))...........)))..))....... (-29.71 = -31.38 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:10 2011