| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,002,249 – 13,002,340 |
| Length | 91 |
| Max. P | 0.789705 |
| Location | 13,002,249 – 13,002,340 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.84 |
| Shannon entropy | 0.20487 |
| G+C content | 0.47174 |
| Mean single sequence MFE | -29.75 |
| Consensus MFE | -24.71 |
| Energy contribution | -24.90 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.789705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13002249 91 + 22422827 ACUGGGUCGGUUCGGACAGGUGUCGAUGGAUCGGAUACGAUCCAUCUAAGUUCGUCCAUUGAUCUCAUCUCCAAAUAUCCAGAUCUUCACA-------- .((((((..(((.(((..((((..(((((((((....)))))))))..((.(((.....))).))))))))).))))))))).........-------- ( -28.70, z-score = -1.36, R) >droEre2.scaffold_4690 4879094 98 - 18748788 ACUGGGUCGUUUCGGACAGGCGUCGAUUGAUCGGAGACGAUCCAUCCAAGUCCGUCCAUUGUUCUCAAUUC-AAAUAUCCAAAUAUCCAGAUCUCCAGA .((((((.((((.((((.(((...(((.(((((....))))).)))...))).))))((((....))))..-........))))))))))......... ( -30.70, z-score = -2.44, R) >droSec1.super_21 746416 91 + 1102487 ACUGGGUCGGUUCGGACAGGUGUCGAUGGAUCGGAUACGAUCCAUCUAGGUUCGUCCAUUGAUCUCAUCUCCACAUAACCAAAUAUCCAGA-------- .((((((.((((.((((..(..(.(((((((((....))))))))).)..)..))))..((....)).........))))....)))))).-------- ( -31.00, z-score = -1.65, R) >droSim1.chrX 9896016 91 + 17042790 ACUGGGUCGGUUCGGACAGGUGUCGAUGGAUCGGAUACGAUCCAUCUAAGUUCGUCCAUUGAUCUCAUCUCCAAAUAUCCAAAUAUCCAGA-------- .((((((.((...((((..(..(.(((((((((....))))))))).)..)..))))..((....))...........))....)))))).-------- ( -28.60, z-score = -1.44, R) >consensus ACUGGGUCGGUUCGGACAGGUGUCGAUGGAUCGGAUACGAUCCAUCUAAGUUCGUCCAUUGAUCUCAUCUCCAAAUAUCCAAAUAUCCAGA________ .((((((......((((.(((...(((((((((....)))))))))...))).))))..((....)).................))))))......... (-24.71 = -24.90 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:06 2011