| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,996,219 – 12,996,354 |
| Length | 135 |
| Max. P | 0.823212 |
| Location | 12,996,219 – 12,996,354 |
|---|---|
| Length | 135 |
| Sequences | 4 |
| Columns | 138 |
| Reading direction | forward |
| Mean pairwise identity | 84.61 |
| Shannon entropy | 0.24117 |
| G+C content | 0.38492 |
| Mean single sequence MFE | -30.65 |
| Consensus MFE | -24.31 |
| Energy contribution | -23.62 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12996219 135 + 22422827 AGGUAGAAAACGAAAAAAAAAAAAAAUACCGAUUGCGUUUCCCAGAAUGCCUAGAUACAGUGAUAAUAAUGUCAGGUCUUGGUUUUAAUAC---CAUGUGAUUCCAGAAGUUGACAACUAGAUUCUCCGGGAACGUCG .((((.....................))))....((((((((.(((((..((((.....((....))..((((((.(..(((..(((....---....)))..)))..).)))))).)))))))))..)))))))).. ( -28.40, z-score = -0.98, R) >droSec1.super_21 740744 128 + 1102487 ----------AAUAAUAAAACAAAAAUACCCAUUGCGUUUCCCAGAAUGCCUAGAUACAGUGAUAAUAACGUCAGGUCUUGGAUUUAAUACUACCAUGUGAUUCCAGAAGUUGACAACUAGAUUCUUCGGGAACGUCG ----------........................((((((((.(((((..((((.....((.......))(((((.(..((((.....(((......)))..))))..).)))))..)))))))))..)))))))).. ( -28.50, z-score = -1.88, R) >droYak2.chrX 7271619 122 + 21770863 -------------AGGUUGAAAAUUAUACCGAUUGCGUUUCCCAGAAUGCCUAGAUACAGUGAUAAUAAUGUCAGGUCAUGGAUUUAAUAC---CAUGUGAUUCUAGAAGUUGACAACUAGAUUCUCUGGGAACGUCG -------------.(((..........)))....(((((.((((((..((((.((((..((....))..))))))))(((((........)---)))).((.(((((..(....)..))))).))))))))))))).. ( -33.10, z-score = -2.26, R) >droEre2.scaffold_4690 4873294 122 - 18748788 -------------AGCUACAAAAAUAUACCGAUUGCGUUUCCCAGAAUGCCUAGAUACAAUGAUAAUAAUGUCAGGUCAUGGAUUUAAUAC---CAUGUGAUUCCAGAACUUGACAACUGGAUUCUCUGGGGACGUCG -------------.....................(((((.((((((..(.((((.....((....))..((((((((..((((.(((....---....))).))))..)))))))).)))).)..))))))))))).. ( -32.60, z-score = -2.17, R) >consensus _____________AAAAAAAAAAAAAUACCGAUUGCGUUUCCCAGAAUGCCUAGAUACAGUGAUAAUAAUGUCAGGUCAUGGAUUUAAUAC___CAUGUGAUUCCAGAAGUUGACAACUAGAUUCUCCGGGAACGUCG ..................................((((((((.(((((..((((.....((.......))(((((.(..((((....(((......)))...))))..).)))))..)))))))))..)))))))).. (-24.31 = -23.62 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:05 2011