| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,991,654 – 12,991,765 |
| Length | 111 |
| Max. P | 0.541029 |
| Location | 12,991,654 – 12,991,765 |
|---|---|
| Length | 111 |
| Sequences | 14 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.24 |
| Shannon entropy | 0.69512 |
| G+C content | 0.48893 |
| Mean single sequence MFE | -34.03 |
| Consensus MFE | -13.49 |
| Energy contribution | -12.61 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.84 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12991654 111 + 22422827 UCUUGUACUUAGAUGACAAGUCAAGGGCCAGUGUCUUCAGUGCUUUGAAGGGAUCCUCGUCGCCCUUGCUGGGCGACUCCAGUCGGUACAUGAAGAUCUGAGAGGUAAAAU----- (((((.((((.......)))))))))..(((.((((((((((((..((..(((.....(((((((.....))))))))))..))))))).))))))))))...........----- ( -39.70, z-score = -2.15, R) >droGri2.scaffold_14853 9210140 112 - 10151454 UCUUGUAUUUGGAUGAUAAGUCCAAGGCCAGUUUCUUCAGUGCCUUGAAGGGAUCAUCAUCCCCUUUGCUGGGCGAAUUCAAGCGAUACAGAAAGAUCUGCAGCAAAAAGGG---- ...((..(((((((.....)))))))..))((..((((((....))))))..)).......((((((((((.((........))....((((....)))))))))..)))))---- ( -32.00, z-score = -0.69, R) >droMoj3.scaffold_6328 405682 109 + 4453435 UCUUGUACUUGGAUGACAAAUCAAGGGCCAACUUCUUCAGGCUCUUGAAGGGAUCGUCGUCACCCUUGCUGGGCGAUUCGAGCCGGUACAGAAAGAUCUGAAAGACGGA------- .......((((((((((...(((((((((..........)))))))))...).)))))(((.(((.....))).))).))))(((...((((....)))).....))).------- ( -34.60, z-score = -0.83, R) >droVir3.scaffold_12928 3496474 116 - 7717345 UCUUGUAUUUGGUGGAUAAAUCCAAGGCCAACUUCUUCAGAGUCUUGAAGGGAUCAUCGUCGCCCUUGCUGGGCGAGUCGAAGCGGUACAAAAAUAUCUGAAAGUGUACAUAUGUA ...(((((....((((((........(((...((((((((....))))))))....(((((((((.....))))))..)))...))).......)))))).....)))))...... ( -29.56, z-score = -0.41, R) >droWil1.scaffold_181096 9624477 109 + 12416693 UCUUAUACUUUGAGGACAAGUCGAGAGCCAAGGUCUUCAAAGCCUUGAAAGGAUCGUCAUCACCCUUGCUGGGUGAGUCCAGGCGGUAAAGAAAGAUCUGAAAUCAAAA------- ((((...((((((((((..(.(....).)...))))))))))(((....)))((((((.((((((.....)))))).....)))))).)))).................------- ( -32.20, z-score = -1.45, R) >droPer1.super_15 279497 111 + 2181545 UUUUGUACUUGGAGGAGAGGUCGAGGGCCAGCGUCUUGAGCCCUUUGAAGGGAUCCUCAUCGCCUUUGCUGGGCGAGUCCAGGCGGUACAGGAAGAUCUGUGGGCGAUAAG----- ...........(((((....(((((((((((....))).)))).)))).....)))))((((((.((((((((....)))).))))(((((......)))))))))))...----- ( -40.10, z-score = -0.34, R) >dp4.chrXL_group1a 7924451 111 + 9151740 UUUUGUACUUGGAGGAGAGGUCGAGGGCCAGCGUCUUGAGGCCUUUGAAGGGAUCCUCAUCGCCUUUGCUGGGCGAGUCCAGGCGGUACAGGAAGAUCUGUGGGCGAUAAG----- ...........(((((....(((((((((..........))))))))).....)))))((((((.((((((((....)))).))))(((((......)))))))))))...----- ( -42.70, z-score = -1.25, R) >droAna3.scaffold_13117 3937492 105 + 5790199 UUUUGUAUUUCGUGGACAGGUCCAGGGCCAGAGUCUUGAGCGACUUGAAGGGAUCAUCGUCGCCCUUACUGGGCGAGUCCAGGCGAUAUAAGAAGAUCUGAAAGG----------- (((((((((.(.(((((.(((((.......(((((......)))))....)))))....((((((.....))))))))))).).)))))))))............----------- ( -40.00, z-score = -2.74, R) >droEre2.scaffold_4690 4868731 109 - 18748788 UCUUGUACUUUGAGGACAAGUCCAGGGCCAGCGUCUUCAAUGCCUUGAAGGGAUCCUCGUCGCCCUUGCUGGGCGAGUCCAGUCGGUACAUGAAGAUCUACGAGGUGGA------- ((((((.(((..(((....((..(((((....)))))..)).)))..)))(((((.(((((((((.....))))))((((....)).)).))).)))))))))))....------- ( -37.50, z-score = -0.31, R) >droYak2.chrX 7267079 107 + 21770863 UUUUGUACUUUGAGGACAAGUCCAGGGCCAGCGUCUUCAAUGCCUUGAAGGGAUCCUCGUCGCCCUUGCUGGGCGAGUCCAGGCGGUACAUGAAGAUCUACAAGGUG--------- .........((((((((..((.....))....)))))))).((((((...(((((.(((((((((.....))))))((((....)).)).))).))))).)))))).--------- ( -37.70, z-score = -1.10, R) >droSec1.super_21 736267 109 + 1102487 UCUUGUACUUAGAUGACAAGUCAAGGGCCAGUGUCUUCAGUGCUUUGAAGGGAUCCUCGUCGCCCUUGCUGGGCGAGUUCAGUCGGUACAUGAAGAUCUACGAGGCGAA------- (((((.((((.......)))))))))(((.((((((((((((((..((..((((.....((((((.....))))))))))..))))))).)))))))..))..)))...------- ( -38.00, z-score = -1.38, R) >droSim1.chrX_random 3585810 109 + 5698898 UCUUGUACUUAGAUGACAAGUCAAGGGCCAGUGUCUUCAGUGCUUUGAAGGGAUCCUCGUCGCCCUUGCUGGGCGAGUUCAGUCGGUACAUGAAGAUCUACGAGGCGAA------- (((((.((((.......)))))))))(((.((((((((((((((..((..((((.....((((((.....))))))))))..))))))).)))))))..))..)))...------- ( -38.00, z-score = -1.38, R) >anoGam1.chrU 15054147 97 - 59568033 GUUUAUGUUUCUCUGUGAGGGCUAAAGCAAUAUUUUUUAGAGGAAGAAAUACAUCUUGAUCUCCUUUACUAGGGGUUUCCGCACGAUAAAAGAAUAU------------------- ((...(.((((((((.(((.((....))....)))..)))))))).)...))(((.((..(((((.....)))))......)).)))..........------------------- ( -16.50, z-score = 0.72, R) >triCas2.ChLG6 11709520 92 + 13544221 UUUUGUAUUUGCUUGUUACUUUGGUAGCGUACGUUUUAACAUCGUAGAAAACAUCACUUGUGCCUUUAUUACUCGAGUUGGGCUGGUACAGU------------------------ ..((((((..((((...((((.(((((..((((.........))))....(((.....))).......))))).)))).))))..)))))).------------------------ ( -17.90, z-score = 0.33, R) >consensus UCUUGUACUUGGAGGACAAGUCCAGGGCCAGCGUCUUCAGUGCCUUGAAGGGAUCCUCGUCGCCCUUGCUGGGCGAGUCCAGGCGGUACAGGAAGAUCUGAAAGG_AAA_______ ...((((((.....(((......((((......))))......................((((((.....))))))))).....)))))).......................... (-13.49 = -12.61 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:05 2011