| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,983,553 – 12,983,643 |
| Length | 90 |
| Max. P | 0.712659 |
| Location | 12,983,553 – 12,983,643 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 67.80 |
| Shannon entropy | 0.57691 |
| G+C content | 0.65481 |
| Mean single sequence MFE | -37.57 |
| Consensus MFE | -19.10 |
| Energy contribution | -19.20 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12983553 90 + 22422827 ---GUGCUGGACGCUG-----GGCUAUGCUGAUACCCGAUCCGGAAACGGAACCUGCGCC-----CAAGGAAGGUGCGUGGGUGGCGGAUGUGGCUGCGGAUG ---........(((..-----((((((((((.((((((.((((....))))....(((((-----.......))))).)))))).))).)))))))))).... ( -38.10, z-score = -2.06, R) >droWil1.scaffold_181096 5743445 100 + 12416693 AUUGAGCCAGCAGCUGUUGUUGGUUUUGCCGAUAUCAGUGCUCCUGUUGAUGUUGAUGCUGAUGAUGAUAAUGAUGGACCGGUAGCCAACCCAGCAGCUC--- ...((((.((((.(((.((((((.....)))))).)))))))..(((((..((((.(((((..................)))))..)))).)))))))))--- ( -29.07, z-score = -0.96, R) >droSim1.chrX_random 3577279 90 + 5698898 ---GUGCUGGCCGCUG-----GGCUAUGCUGAUACCCGAUCCGGAAACGGAACCUGCGCC-----CAGGGGCGGUGCGUGGGCGGCGGAUGUGGCUGCGGAUG ---.(((.((((((((-----((.(((....))))))).((((....))))..(((((((-----((.(.......).))))).))))..))))))))).... ( -40.10, z-score = -0.42, R) >droSec1.super_21 728178 84 + 1102487 ---GUGCUGGCCGCUG-----GGCUAUGCUGAUACCCGAUCCGGAAACGGAACCUGCGCC-----CAGGGGCGGUGCGUGGGCGGCGGAUGUGGCUG------ ---.....((((((((-----((.(((....))))))).((((....))))..(((((((-----((.(.......).))))).))))..)))))).------ ( -37.60, z-score = -0.45, R) >droYak2.chrX 7259275 90 + 21770863 ---GUGCCGGCCGCUG-----GGCUAUGCUGAUUCCCGAUCCGGAAACGGAACCUGUGCC-----CAGGGUCGGUGCGUGGGCGGCGGAUGUGGCUGCUGAUG ---(..((((((.(((-----(((.....((.....)).((((....))))......)))-----)))))))))..)((.((((((.......)))))).)). ( -46.50, z-score = -2.88, R) >droEre2.scaffold_4690 4860912 84 - 18748788 ---GUGCCGGCCGCUG-----GGCUAUGCUGAUUCCCGAUCCGGGAACGGAACCUGCGCC-----CAGGGGCGGUGCGUGGGCGGCGGAUGUGGCUG------ ---(..(((.((.(((-----(((....(((.((((((...))))))))).......)))-----))))).)))..)...(((.((....)).))).------ ( -42.00, z-score = -0.95, R) >droAna3.scaffold_13117 3925411 84 + 5790199 ---GAGCUGGCCGGUG-----GACUAUGCUAAUACCGCCACCGGUACCCAUGCCGAUGCC-----CGGUGGGGAUGUGACGGAUGCGGAUGCGGAUG------ ---..((..(((((((-----(..(((....)))...)))))))).(((((.(((...((-----(....)))......)))))).))..)).....------ ( -29.60, z-score = 0.22, R) >consensus ___GUGCUGGCCGCUG_____GGCUAUGCUGAUACCCGAUCCGGAAACGGAACCUGCGCC_____CAGGGGCGGUGCGUGGGCGGCGGAUGUGGCUGC_____ .....((((.((((((.......................((((....)))).(((((((................)))))))))))))...))))........ (-19.10 = -19.20 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:04 2011