| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,937,121 – 12,937,230 |
| Length | 109 |
| Max. P | 0.744380 |
| Location | 12,937,121 – 12,937,230 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.33 |
| Shannon entropy | 0.33477 |
| G+C content | 0.51478 |
| Mean single sequence MFE | -33.75 |
| Consensus MFE | -23.69 |
| Energy contribution | -24.25 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12937121 109 + 22422827 CGGUGGCCACAGUUGGCCAAGACCCAUGGCCGAAUUGCUGCCUUGCUUGAGGCACUUAUCGUCACCUCGAAA--GGCUUGAGUUGUAUGUGGUUUAGCCGAUUUUUUGCCA ((((.((((((.(((((((.......)))))))......(((((..((((((.((.....))..))))))))--)))..........))))))...))))........... ( -36.80, z-score = -1.18, R) >droSim1.chrX 9853918 95 + 17042790 CGGUGGCCACAGUUGGCCAAGACCCAUGGCCGAAUUGCUGCCUUGCUUGAGGGACUAAUCGUCACCUCGAAG--G--------------UGGUUCACCCAAUUUAUUGCUG .(((((((((..(((((((.......)))))))...((......))(((((((((.....))).))))))..--)--------------))).)))))............. ( -34.90, z-score = -2.04, R) >droSec1.super_21 684315 95 + 1102487 CGGUGGCCACAGUUGGCCAAGACCCAUGGCCGAAUUGCUGCCUUGCUUGAGGGACUAAUCGUCACCUCGAAG--G--------------UGGUUCACCCAAUUUAUUGCUG .(((((((((..(((((((.......)))))))...((......))(((((((((.....))).))))))..--)--------------))).)))))............. ( -34.90, z-score = -2.04, R) >droYak2.chrX 7211132 111 + 21770863 CGGUGGCCACAGUUGGCCAAGACUCAUGGUCAAAUGGCUGUCCUGCUCCAAUGACUAAUCGUCGCCUUCAAAACGGCUUUAGUUUUAUGUAGUUUACUCAAUUUAUUGCUU .((..((((...(((((((.......))))))).))))..))((((......((((((..((((.........)))).))))))....))))................... ( -28.40, z-score = -1.21, R) >consensus CGGUGGCCACAGUUGGCCAAGACCCAUGGCCGAAUUGCUGCCUUGCUUGAGGGACUAAUCGUCACCUCGAAA__G______________UGGUUCACCCAAUUUAUUGCUG .((..((.....(((((((.......)))))))...))..))..(((((((((((.....))).))))))...................(((.....))).......)).. (-23.69 = -24.25 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:39:00 2011