Locus 14374

Sequence ID dm3.chrX
Location 12,935,068 – 12,935,133
Length 65
Max. P 0.817881
window19788 window19789

overview

Window 8

Location 12,935,068 – 12,935,133
Length 65
Sequences 3
Columns 67
Reading direction forward
Mean pairwise identity 67.01
Shannon entropy 0.43859
G+C content 0.26887
Mean single sequence MFE -8.69
Consensus MFE -5.02
Energy contribution -4.58
Covariance contribution -0.44
Combinations/Pair 1.70
Mean z-score -1.64
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.79
SVM RNA-class probability 0.817881
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 12935068 65 + 22422827
AGUAAUUUCCAUAUAUGAAUAUGUGGAAUUUUACCUUUUUUUUCGUAUUUUUGAUCCACAUGUUC--
................(((((((((((...............(((......))))))))))))))-- ( -12.06, z-score =  -2.62, R)
>droEre2.scaffold_4690 4816316 61 - 18748788
AGUAAUUUCUAUAUACAUACAUUUCGAAUACAACUUUUCU------AUUCUUGGCUAGCAAGCAUUC
.........................(((((.........)------))))...(((....))).... (  -3.10, z-score =   0.50, R)
>droSec1.super_21 682365 60 + 1102487
AGUAAUUUCCAUAUAUGAAUAUGUGGAAUUUUACCUUUUCU-----AUUUUUGACCCACAUAUUU--
.((((.(((((((((....)))))))))..)))).......-----...................-- ( -10.90, z-score =  -2.79, R)
>consensus
AGUAAUUUCCAUAUAUGAAUAUGUGGAAUUUUACCUUUUUU_____AUUUUUGACCCACAUGUUU__
................((((((((((.............................)))))))))).. ( -5.02 =  -4.58 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 12,935,068 – 12,935,133
Length 65
Sequences 3
Columns 67
Reading direction reverse
Mean pairwise identity 67.01
Shannon entropy 0.43859
G+C content 0.26887
Mean single sequence MFE -8.65
Consensus MFE -5.80
Energy contribution -6.03
Covariance contribution 0.23
Combinations/Pair 1.55
Mean z-score -1.24
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.61
SVM RNA-class probability 0.760307
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 12935068 65 - 22422827
--GAACAUGUGGAUCAAAAAUACGAAAAAAAAGGUAAAAUUCCACAUAUUCAUAUAUGGAAAUUACU
--(((.(((((((.......(((..........)))....))))))).)))................ ( -10.30, z-score =  -2.30, R)
>droEre2.scaffold_4690 4816316 61 + 18748788
GAAUGCUUGCUAGCCAAGAAU------AGAAAAGUUGUAUUCGAAAUGUAUGUAUAUAGAAAUUACU
..((((.(((.......((((------(.(.....).))))).....))).))))............ (  -6.40, z-score =   0.10, R)
>droSec1.super_21 682365 60 - 1102487
--AAAUAUGUGGGUCAAAAAU-----AGAAAAGGUAAAAUUCCACAUAUUCAUAUAUGGAAAUUACU
--.((((((((((........-----..............))))))))))................. (  -9.25, z-score =  -1.52, R)
>consensus
__AAACAUGUGGGUCAAAAAU_____AAAAAAGGUAAAAUUCCACAUAUUCAUAUAUGGAAAUUACU
..(((((((((((...........................)))))))))))................ ( -5.80 =  -6.03 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:59 2011