| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,929,277 – 12,929,385 |
| Length | 108 |
| Max. P | 0.892999 |
| Location | 12,929,277 – 12,929,385 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 92.45 |
| Shannon entropy | 0.10203 |
| G+C content | 0.46768 |
| Mean single sequence MFE | -31.83 |
| Consensus MFE | -29.11 |
| Energy contribution | -28.67 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12929277 108 - 22422827 AGAGUUGGGCCAGAAAUGAACUUUCCCCCAAAUGCCACAGAUGUAUGUAUGCAUGUAUAUGCCCAUGGCUGUGGUAUUGCCACUUCUUUGGCAACCAGCCAUUUGGCG ....(((((...((((.....)))).))))).((((((((..((((((((....))))))))......))))))))((((((......))))))...(((....))). ( -35.30, z-score = -1.59, R) >droSim1.chrX_random 3555332 102 - 5698898 AGAGUU-GGCCAGAAAUGAAC-UUCCCCCAAAUGCCACAGAUGUAUGU----AUGUAUAUGCCCAUAAUUGUGGCAUUGCCACUUCUUUGGCAACCCGCCAUUUGGCU ((((.(-(((((....))...-........((((((((((.(((..((----((....))))..))).)))))))))))))).)))).((((.....))))....... ( -30.10, z-score = -2.02, R) >droSec1.super_21 677287 102 - 1102487 AGAGUU-GGCCAGAAAUGAAC-UUCCCCCAAAUGCCACAGAUGUAUGU----AUGUAUAUGCCCAUAAUUGUGGCAUUGCCACUUCUUUGGCAACCCGCCAUUUGGCU ((((.(-(((((....))...-........((((((((((.(((..((----((....))))..))).)))))))))))))).)))).((((.....))))....... ( -30.10, z-score = -2.02, R) >consensus AGAGUU_GGCCAGAAAUGAAC_UUCCCCCAAAUGCCACAGAUGUAUGU____AUGUAUAUGCCCAUAAUUGUGGCAUUGCCACUUCUUUGGCAACCCGCCAUUUGGCU ........((((((................((((((((((..((((((........))))))......))))))))))((((......)))).........)))))). (-29.11 = -28.67 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:57 2011