| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,924,270 – 12,924,334 |
| Length | 64 |
| Max. P | 0.925621 |
| Location | 12,924,270 – 12,924,334 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 78.76 |
| Shannon entropy | 0.40923 |
| G+C content | 0.38986 |
| Mean single sequence MFE | -15.30 |
| Consensus MFE | -9.07 |
| Energy contribution | -10.44 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12924270 64 + 22422827 AAAUAAGUACGAAUACAUAGUAUUUGGUCCGUUGCCUCUCG-AUUUCUUUGGGCAACGGUGCGUA .........(((((((...)))))))(((((((((((...(-....)...))))))))).))... ( -19.70, z-score = -2.77, R) >droEre2.scaffold_4690 4806049 64 - 18748788 AAAUAAAUACAAAUACACAGUAUUUGGUUCAUUGCCUCUCG-GUUUCUUUGGCCAACGGUGCGUA .........(((((((...))))))).......((((...(-(((.....))))...)).))... ( -10.10, z-score = 0.08, R) >droYak2.chrX 7198013 64 + 21770863 AAAGAAAUACAAAAACAGAGUAUUUGCUCCGUUGCCUCUCG-AUUUCUUUGGGCAACGGUGCGUA ....((((((.........))))))((.(((((((((...(-....)...))))))))).))... ( -21.00, z-score = -3.43, R) >droSec1.super_21 666675 64 + 1102487 AAAUAAAUACAAAUACACAGUAUUUGGUCCGUUGCCUCUCG-AUUUCUUUGGGCAACGGUGCGUA .........(((((((...)))))))(((((((((((...(-....)...))))))))).))... ( -20.00, z-score = -3.56, R) >droSim1.chrX 9847482 64 + 17042790 AAAUAAAUACAAAUACACAGUAUUUGGUCCGUUGCCUCUCG-AUUUCUUUGGGCAACGGUGCGUA .........(((((((...)))))))(((((((((((...(-....)...))))))))).))... ( -20.00, z-score = -3.56, R) >droMoj3.scaffold_6328 295084 65 + 4453435 AAAACCAAACAAAUAUUUUCUUUUUCUUCAAUUUUUUUCAGUGUAUCUCUGUGUCUCUCUGUGUG ......................................(((.(...(.....)...).))).... ( -1.00, z-score = 1.05, R) >consensus AAAUAAAUACAAAUACACAGUAUUUGGUCCGUUGCCUCUCG_AUUUCUUUGGGCAACGGUGCGUA .........(((((((...)))))))..(((((((((.............)))))))))...... ( -9.07 = -10.44 + 1.36)
| Location | 12,924,270 – 12,924,334 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 78.76 |
| Shannon entropy | 0.40923 |
| G+C content | 0.38986 |
| Mean single sequence MFE | -14.63 |
| Consensus MFE | -7.28 |
| Energy contribution | -8.94 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12924270 64 - 22422827 UACGCACCGUUGCCCAAAGAAAU-CGAGAGGCAACGGACCAAAUACUAUGUAUUCGUACUUAUUU ((((..((((((((....(....-)....))))))))....(((((...)))))))))....... ( -16.00, z-score = -2.85, R) >droEre2.scaffold_4690 4806049 64 + 18748788 UACGCACCGUUGGCCAAAGAAAC-CGAGAGGCAAUGAACCAAAUACUGUGUAUUUGUAUUUAUUU ((((((...((((.........(-(....)).......))))....))))))............. ( -10.79, z-score = -0.46, R) >droYak2.chrX 7198013 64 - 21770863 UACGCACCGUUGCCCAAAGAAAU-CGAGAGGCAACGGAGCAAAUACUCUGUUUUUGUAUUUCUUU ...((.((((((((....(....-)....)))))))).))((((((.........)))))).... ( -19.80, z-score = -3.48, R) >droSec1.super_21 666675 64 - 1102487 UACGCACCGUUGCCCAAAGAAAU-CGAGAGGCAACGGACCAAAUACUGUGUAUUUGUAUUUAUUU ......((((((((....(....-)....))))))))..(((((((...)))))))......... ( -18.20, z-score = -3.36, R) >droSim1.chrX 9847482 64 - 17042790 UACGCACCGUUGCCCAAAGAAAU-CGAGAGGCAACGGACCAAAUACUGUGUAUUUGUAUUUAUUU ......((((((((....(....-)....))))))))..(((((((...)))))))......... ( -18.20, z-score = -3.36, R) >droMoj3.scaffold_6328 295084 65 - 4453435 CACACAGAGAGACACAGAGAUACACUGAAAAAAAUUGAAGAAAAAGAAAAUAUUUGUUUGGUUUU ..............(((.......)))...(((((..((.(((.........))).))..))))) ( -4.80, z-score = 0.33, R) >consensus UACGCACCGUUGCCCAAAGAAAU_CGAGAGGCAACGGACCAAAUACUGUGUAUUUGUAUUUAUUU ......((((((((...............))))))))..(((((((...)))))))......... ( -7.28 = -8.94 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:56 2011