Locus 14370

Sequence ID dm3.chrX
Location 12,922,415 – 12,922,518
Length 103
Max. P 0.707925
window19783

overview

Window 3

Location 12,922,415 – 12,922,518
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.53
Shannon entropy 0.39244
G+C content 0.33857
Mean single sequence MFE -19.52
Consensus MFE -9.33
Energy contribution -11.33
Covariance contribution 2.00
Combinations/Pair 1.21
Mean z-score -2.12
Structure conservation index 0.48
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.47
SVM RNA-class probability 0.707925
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12922415 103 - 22422827
GC-AAACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUCCACAUUUAAUCCACAAAG---
..-..........(((((((((((.(((..((((........))))..)))...)))))(((((((.....)))).)))))))))...................--- ( -19.10, z-score =  -2.12, R)
>droSim1.chrX 9845614 103 - 17042790
GC-AAACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUGCACAUUUAAUCUACAAAG---
((-((.(((..........(((((.(((..((((........))))..)))...)))))(((((((.....)))).)))))).)))).................--- ( -23.10, z-score =  -3.07, R)
>droSec1.super_21 664871 103 - 1102487
GC-AAACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUGCACAUUUAAUCCACAAAG---
((-((.(((..........(((((.(((..((((........))))..)))...)))))(((((((.....)))).)))))).)))).................--- ( -23.10, z-score =  -2.95, R)
>droYak2.chrX 7196161 107 - 21770863
GCAAAACCUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUUCAUAUUUCAACUUUUUCCACU
...((((((..........(((((.(((..((((........))))..)))...)))))(((((((.....)))).))).))))))..................... ( -22.40, z-score =  -3.08, R)
>droEre2.scaffold_4690 4804281 102 + 18748788
GC-AAACUUAAUAAACUUUUGCAGGUG-AAAACUCUUUAAAAAGUUACCCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGACCCAUAUUUAAUCCACAAAG---
((-((((((....(((((((..((((.-...)).))...))))))).(((........)))........))))).)))...(((...........)))......--- ( -16.80, z-score =  -0.63, R)
>triCas2.ChLG3 15171558 102 + 32080666
GC-AGAUCUAAUAGACUUCCAAUUGUAAAAAAAAUCGUAAAUAAAUACUCAACUUUGAAGGCUAA--AAAAAUU-UUUUUUGCUCUUAAAAUUUUUCUACACGUGG-
..-...............(((..((((.(((((...(((......))).....(((((..((.((--(((....-))))).))..))))).))))).))))..)))- ( -12.60, z-score =  -0.86, R)
>consensus
GC_AAACUUAAUAAACUUUCGCAGGUGAAAAACUCCUUAAAAAGUUACUCAACACUGCGGGCUAAUUAAAAGUUAUGCCAAGGUUCCACAUUUAAUCCACAAAG___
....(((((..........(((((.(((..((((........))))..)))...)))))(((((((.....)))).))).)))))...................... ( -9.33 = -11.33 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:54 2011