| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,919,202 – 12,919,321 |
| Length | 119 |
| Max. P | 0.542567 |
| Location | 12,919,202 – 12,919,321 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Shannon entropy | 0.39127 |
| G+C content | 0.49793 |
| Mean single sequence MFE | -33.04 |
| Consensus MFE | -21.96 |
| Energy contribution | -22.44 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12919202 119 + 22422827 UCGUUUUUGGCCGGUUGAGACACUAUUUUUGGCAUCGUCCUUGUUGCCAUGUUGUUGGCUUUGCACUUUGCCAGCACUUGACUGCCCAACUUUUGGUUCGUGGACCACCUGGAAAGCCA ..((((((((.((((..((..........(((((.((....)).)))))...(((((((..........)))))))))..)))).))......(((((....)))))....)))))).. ( -37.60, z-score = -1.50, R) >droSec1.super_21 661714 119 + 1102487 UCGUUUUUGGCCGGUUGAGACACUAUUUUUGGCAUCGUCCUUGUUGCCAUGUUGUUGGCUUUGCACUUUGCCAGCACUUGACUGCCCAACUUUUCGUUCGUGGACCACCUGCAAAGCCA ..((((((((.((((..((..........(((((.((....)).)))))...(((((((..........)))))))))..)))).)))...........(..(.....)..)))))).. ( -33.60, z-score = -0.88, R) >droYak2.chrX 7192971 119 + 21770863 UCGUUUUUGGCCAGUUGAGACACUAUUUUUGGCAUCGUCCUUGUUGCCAUGUUGUUGGCUUUGCACUUUGCCAGCACUUGACUGUCCAGCAUUUCGUUCGUCGACCACCUGCAAAGCCA ..((((((((.((((..((..........(((((.((....)).)))))...(((((((..........)))))))))..)))).)))(((..(((.....))).....)))))))).. ( -35.00, z-score = -1.77, R) >droEre2.scaffold_4690 4801316 119 - 18748788 UCGUUUUUGGCCGGUUGGGACACUAUUUUUGGCCACGUCCUUGUUGCCAUGUUGUUGGCUUUGCACUUUGCCAGCACUUGACUGUCCAACUUUUCAUUCGUGCUCCACCUGGAAAGCCA ......((((.((((..((..........((((.(((....))).))))...(((((((..........)))))))))..)))).))))(((((((...(((...))).)))))))... ( -35.50, z-score = -1.32, R) >droAna3.scaffold_13117 3852355 101 + 5790199 CCUUUUUUGGUUGAACGAGACACUAUUUUCGACAUCGCUCUUGUUGCCAUGUUGUUGGCACUUGACUGC-CCAACUUUUGGCCCUGCCACUGGCCACGCCCA----------------- ........(((((..(((((......))))).....((((..((.((((......))))))..))..))-.)))))..(((((........)))))......----------------- ( -23.50, z-score = -0.79, R) >consensus UCGUUUUUGGCCGGUUGAGACACUAUUUUUGGCAUCGUCCUUGUUGCCAUGUUGUUGGCUUUGCACUUUGCCAGCACUUGACUGUCCAACUUUUCGUUCGUGGACCACCUGCAAAGCCA ......((((.((((((((...........((((.((....)).)))).....((((((..........)))))).)))))))).)))).............................. (-21.96 = -22.44 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:53 2011