| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,915,574 – 12,915,629 |
| Length | 55 |
| Max. P | 0.859943 |
| Location | 12,915,574 – 12,915,629 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 95.45 |
| Shannon entropy | 0.07375 |
| G+C content | 0.33813 |
| Mean single sequence MFE | -5.45 |
| Consensus MFE | -5.64 |
| Energy contribution | -5.45 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.01 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12915574 55 + 22422827 UUUCACUUUUAUAGUCCUCAUAUGUCAUUGCAGUCGUUUUUUACCUGCGAAUAUU ...........................((((((..((.....))))))))..... ( -5.50, z-score = -1.07, R) >droSim1.chrX_random 3549988 55 + 5698898 UUUCACUUUUAUAGUCCUCAUAUGUCAUUGCAGUCGUUUUUUACCUGCGAAUAUU ...........................((((((..((.....))))))))..... ( -5.50, z-score = -1.07, R) >droSec1.super_21 658104 55 + 1102487 UUUCACUUUUAUAGUCCUUAUAUGUCAUUGCAGUCGUUUUUUACCUGCGAAUAUU ...........................((((((..((.....))))))))..... ( -5.50, z-score = -1.07, R) >droEre2.scaffold_4690 4797799 54 - 18748788 UUUCACUUUUAUAGUCCUCAUCUGUCAUUGCAGCCGUUUUUCACCUGCGAAUAU- ...........................((((((..(.....)..))))))....- ( -5.30, z-score = -0.82, R) >consensus UUUCACUUUUAUAGUCCUCAUAUGUCAUUGCAGUCGUUUUUUACCUGCGAAUAUU ...........................((((((..(.....)..))))))..... ( -5.64 = -5.45 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:52 2011