| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,899,933 – 12,900,043 |
| Length | 110 |
| Max. P | 0.622912 |
| Location | 12,899,933 – 12,900,043 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 68.62 |
| Shannon entropy | 0.59201 |
| G+C content | 0.44973 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -13.40 |
| Energy contribution | -13.60 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12899933 110 - 22422827 CAUUUUGCUUCCUGUUUGCACUGAC-----GAUUCAACUGAAUUCAAUGAAGUUUUGAUUUCUGGCUGCGAUUGCUUGGCAUGCGAACAGACAGGCAGCCGGAAAACGGAAAACA-- ....((((((.((((((((((..((-----((((((.(((((.((((.......)))).))).)).)).))))).)..)..)))))))))..))))))(((.....)))......-- ( -30.10, z-score = -1.19, R) >droAna3.scaffold_13117 3828925 94 - 5790199 UAUUUUUCUGCCAUGGUUUGUUGGUCCAGAGAUCCUGGCAGAACUACUGGCGUCCUGGCAUUUG--CAAAAUCAA-----AUGCUCCUCGUAUGGGAGUUG---------------- .....((((((((.(((((.(......).))))).))))))))(((...(((....((((((((--......)))-----)))))...))).)))......---------------- ( -27.10, z-score = -1.00, R) >droEre2.scaffold_4690 4783980 112 + 18748788 CAUUUUGCUCUCUGUUUGCACUGAC-----GAUUCAAGUGAAUUCAAUGAAGUUUUGAUUUCUGGCUGGGAUUGCUUGCCAUGCCAACAGACAGGCAGCCGGAAAACGGAAAACAGA ..........(((((((.((((((.-----...)).)))).............((((.(((((((((((.(.....).)))((((........)))))))))))).))))))))))) ( -30.30, z-score = -0.56, R) >droYak2.chrX 7170735 90 - 21770863 CAUUUUGCUCACUGUUUACACUGACU---GGAUUCAAGUGAAUUCAAUGAAGUUUUGAUUUCUG----------------------ACAGACUGGCAGCCGGAAAACGGAAAGCA-- .....((((..((((((...(((..(---((((((....)))))))..(((((....)))))..----------------------.))).((((...)))).))))))..))))-- ( -21.80, z-score = -0.99, R) >droSec1.super_21 643697 110 - 1102487 CAUUUUGCUCCCUGUUUGCACUGAC-----GAUUCAGCUGAAUUCAAUGAAGUUUUGAUUUCUGGCUGGGAUUGCUUGCCAUGCGAACAGACUGGCAGCCGGAAAACGGAAAACA-- ....(((((..(((((((((..(.(-----((((((((((((.((((.......)))).))).)))).))))))....)..)))))))))...)))))(((.....)))......-- ( -33.50, z-score = -1.90, R) >droSim1.chrX 9829725 110 - 17042790 CAUUUUGCUCCCUGUUUGCACUGAC-----GAUUCAACUGAAUUCAAUGAAGUUUUGAUUUCUGGCUGGGAUUGCUUGCCAUGCGAACAGACUGGCAGCCGGGAAACGGAAAACA-- ....(((((..(((((((((.....-----.........(((.((((.......)))).)))((((.((.....)).)))))))))))))...)))))(((.....)))......-- ( -30.10, z-score = -1.14, R) >consensus CAUUUUGCUCCCUGUUUGCACUGAC_____GAUUCAACUGAAUUCAAUGAAGUUUUGAUUUCUGGCUGGGAUUGCUUGCCAUGCGAACAGACUGGCAGCCGGAAAACGGAAAACA__ ....(((((..(((((.(((..........(((((....)))))....(((((....)))))...................))).)))))...)))))(((.....)))........ (-13.40 = -13.60 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:49 2011