Locus 14365

Sequence ID dm3.chrX
Location 12,897,902 – 12,898,008
Length 106
Max. P 0.670317
window19775

overview

Window 5

Location 12,897,902 – 12,898,008
Length 106
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 91.03
Shannon entropy 0.12128
G+C content 0.30415
Mean single sequence MFE -18.40
Consensus MFE -15.74
Energy contribution -15.19
Covariance contribution -0.55
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.670317
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12897902 106 - 22422827
AAUAAAGCCCAUUCCAAUUUCAAUUCCUCUACAUGUGUUUAUUUCAUUAAUUAACAAAUAAUUGGAUUCGAAAGUGCUCGAAUCUGAAAUGUUUUUCUGUUUGUAG
............................(((((..((((.(((.....))).)))).....(..(((((((......)))))))..)..............))))) ( -15.40, z-score =  -1.04, R)
>droSec1.super_21 641715 100 - 1102487
AAUAAAGCCCAUUC------CAAUUCCUCUACAUGUGUUUAUUUGAUUAAUGAACAAAUAAUUAGGUUCGAAAGUCCUUGAAUCUGGAAUGUUUUUCUGUUUGAAG
.........(((((------((.............((((((((.....)))))))).....(((((..(....)..)))))...)))))))...(((.....))). ( -19.90, z-score =  -2.00, R)
>droSim1.chrX 9827718 100 - 17042790
AAUAAAGCCCAUUC------CAAUUCCUCUACAUGUGUUUAUUUGAUUAAUGAACAAAUAAUUAGGUUCGAAAGUCCUUGAAUCUGGAAUGUUUUUCUGUUUGAAG
.........(((((------((.............((((((((.....)))))))).....(((((..(....)..)))))...)))))))...(((.....))). ( -19.90, z-score =  -2.00, R)
>consensus
AAUAAAGCCCAUUC______CAAUUCCUCUACAUGUGUUUAUUUGAUUAAUGAACAAAUAAUUAGGUUCGAAAGUCCUUGAAUCUGGAAUGUUUUUCUGUUUGAAG
....................(((.......((((.((((((((.....)))))))).....((((((((((......)))))))))).))))........)))... (-15.74 = -15.19 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:48 2011