| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,891,237 – 12,891,340 |
| Length | 103 |
| Max. P | 0.516107 |
| Location | 12,891,237 – 12,891,340 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 68.64 |
| Shannon entropy | 0.59491 |
| G+C content | 0.30286 |
| Mean single sequence MFE | -18.67 |
| Consensus MFE | -7.81 |
| Energy contribution | -9.23 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12891237 103 + 22422827 AUCAUUUAAGUCUGAAAUUCAUUUUCGCUCGAUCGCAUUCAUUUCACAUUUAUGUGAAA-UUAAAUUCAUAUUUGAAUAUUUUUC-GGUUGAUCGAAUUCCUGAC-- .........(((.(((.......((((.(((((((.....((((((((....)))))))-)...(((((....)))))......)-)))))).)))))))..)))-- ( -20.91, z-score = -1.76, R) >droSim1.chrX 9820723 103 + 17042790 AUCAUUUAAGUCUGAAAUUCGUUUUCGCUCGAUCGCAUUCAUUUCACAUUUAUGUGAAA-UUAAAUUCAUAUUUGAAUAUUUUUC-GGUUGAUCGAAUUCCUGAC-- .........(((.(.((((((...(((..(((........((((((((....)))))))-)...(((((....))))).....))-)..))).)))))).).)))-- ( -22.00, z-score = -2.00, R) >droSec1.super_21 633430 103 + 1102487 AUCAUUUAAGUCUGAAAUUCGUUUUCGCUCGAUCGCAUUCAUUUCACAUUUAUGUGAAA-UUAAAUUCAUAUUUGAAUAUUUUUC-GGUUGAUCGAAUUCCUGAC-- .........(((.(.((((((...(((..(((........((((((((....)))))))-)...(((((....))))).....))-)..))).)))))).).)))-- ( -22.00, z-score = -2.00, R) >droYak2.chrX 7161894 86 + 21770863 -----------------AUCAUUUAUGUCUGA---AAUUCAUUUCACAUUUUCGUGAAA-UUAAAUUCAUAUUUGAAUAUUUUUCUGGUUGAACGAAUUUUUCCGAC -----------------.........(((.((---((((((((((((......))))))-)....((((.((..(((.....)))..)))))).)))))))...))) ( -15.20, z-score = -1.14, R) >droEre2.scaffold_4690 4776826 102 - 18748788 --UAUGUAAGUCUGAAACUCGCUG-CGCUUGAUCGCAUUCAAUUCACAUGCAUGUGAAA-UUAAAUUCAUAUUUGAAUACUUCUC-GGUUGAUGGAAUUUCUGUCAA --.........((((...((((((-((..(((...........)))..)))).))))..-....(((((....))))).....))-))(((((((.....))))))) ( -18.40, z-score = 0.12, R) >droAna3.scaffold_13117 1960887 92 - 5790199 --UGAUUAAGU--GAAACUUGUUUUCGAUUCAUUGC-CACAAACAAAAGGCAUUCAAAGCUUAUAAUCA-ACUUGA-UGUUUCCCAAAUCGAAUCAAAA-------- --.((((..(.--(((((..(((((.((.....(((-(..........)))).))))))).....(((.-....))-)))))))..)))).........-------- ( -13.50, z-score = -0.48, R) >consensus __CAUUUAAGUCUGAAAUUCGUUUUCGCUCGAUCGCAUUCAUUUCACAUUUAUGUGAAA_UUAAAUUCAUAUUUGAAUAUUUUUC_GGUUGAUCGAAUUCCUGAC__ .......................((((.((((((........((((((....))))))......(((((....)))))........)))))).)))).......... ( -7.81 = -9.23 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:46 2011