Locus 14361

Sequence ID dm3.chrX
Location 12,887,775 – 12,887,870
Length 95
Max. P 0.947837
window19770

overview

Window 0

Location 12,887,775 – 12,887,870
Length 95
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 88.24
Shannon entropy 0.16094
G+C content 0.34491
Mean single sequence MFE -24.30
Consensus MFE -20.32
Energy contribution -20.43
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -2.34
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.53
SVM RNA-class probability 0.947837
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12887775 95 + 22422827
AGAAUAGAGCGAGCAUAAAAUUGAUUGU--GAUUUUUAUUUUAUAAUCUCAGUGGAGCAGCCCAGUCUACUAGAGGUUUUAAAUCGCUUAUUAGAUU
......((((((...(((((((((((((--((........))))))))((((((((.(......))))))).)))))))))..))))))........ ( -22.50, z-score =  -1.97, R)
>droSec1.super_21 630052 95 + 1102487
AGGAUAGAGCGAGCAUAAAUUUGUUCGU--GAUUUUUAUUUUAUAGUCUCAGUGGGUCAACCCAGUCUACUAGAGUCUAUAAAUGGCUUAUUGGAUU
......(((((((((......)))))..--.........(((((((.(((((((((.(......))))))).))).)))))))..))))........ ( -24.80, z-score =  -2.13, R)
>droSim1.chrX 9817283 97 + 17042790
AGGAUAGAGCGAGCUUAAAUUUGUUCGUUUCAUUUUUAUUUUAUAGUCUCAGUGGGUCAACCCAGUCUACUAGAGUCUAUAAAUCGCUUAUUGGAUU
(((((..(((((((........)))))))..)))))...(((((((.(((((((((.(......))))))).))).))))))).............. ( -25.60, z-score =  -2.90, R)
>consensus
AGGAUAGAGCGAGCAUAAAUUUGUUCGU__GAUUUUUAUUUUAUAGUCUCAGUGGGUCAACCCAGUCUACUAGAGUCUAUAAAUCGCUUAUUGGAUU
......(((((((((......))))).............(((((((.(((((((((.(......))))))).))).)))))))..))))........ (-20.32 = -20.43 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:44 2011