| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,887,591 – 12,887,708 |
| Length | 117 |
| Max. P | 0.699992 |
| Location | 12,887,591 – 12,887,708 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.41 |
| Shannon entropy | 0.12169 |
| G+C content | 0.47024 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -26.15 |
| Energy contribution | -26.28 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12887591 117 + 22422827 UGAUCGGGACUUAUAUUGGAGAUAGUGGAAGCCCAAGAC---CAUGGCAAAGUAAUCCCUGACAACAGAAGGAUUAGCCGCAAUGUAAGCCCCGCAACAUAUUAGCGGAAACACAACAGA ....((((.(((((((((......((((..........)---)))(((....(((((((((....)))..))))))))).))))))))).))))..........(.(....).)...... ( -31.00, z-score = -2.55, R) >droSim1.chrX 9817099 117 + 17042790 UGAUCGGGACUUAUAUUGGAGAUAGUGGAAGCCCAGGAC---CAGGGCAAAGUAAUCCCUGACAACAGAAGGAUUAGCCGCAAUGUAAGCCCCGCAACACAUUAGCUGAAACACAACAGA ....((((.(((((((((............((((.....---..))))....(((((((((....)))..))))))....))))))))).))))...........(((........))). ( -31.70, z-score = -2.10, R) >droSec1.super_21 629869 116 + 1102487 UGAUCGGGACUUAUAUUGGAGAUAGUGGAAGCCCAGGAC---CAGGGCAAAGUAAUCCCUGACAACAGAAGGAUUAGCCGCAAUGUAAGCCCCGCAACACAUUA-CUGAAACACAACAGA ....((((.(((((((((............((((.....---..))))....(((((((((....)))..))))))....))))))))).))))..........-(((........))). ( -32.00, z-score = -2.55, R) >droYak2.chrX 7158343 120 + 21770863 UGAUCGGGACUUAUAUUGAAGAUGGUGGAAGCCCAGGAGGAGCAGGGCAAAGUAAUCCCUAACAACAGAAGGAUUAGCCGCAUUGUAAGCUCUGCAGCACAUUAGCUGAAAUACAACAGG ....(((..((((((.((....((((....((((..........))))....((((((............)))))))))))).))))))..)))((((......))))............ ( -27.80, z-score = 0.12, R) >consensus UGAUCGGGACUUAUAUUGGAGAUAGUGGAAGCCCAGGAC___CAGGGCAAAGUAAUCCCUGACAACAGAAGGAUUAGCCGCAAUGUAAGCCCCGCAACACAUUAGCUGAAACACAACAGA ....((((.(((((((((.......(((....)))..........(((....(((((((((....)))..))))))))).))))))))).)))).......................... (-26.15 = -26.28 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:43 2011