| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,245,810 – 11,245,906 |
| Length | 96 |
| Max. P | 0.529805 |
| Location | 11,245,810 – 11,245,906 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 64.31 |
| Shannon entropy | 0.68185 |
| G+C content | 0.50821 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -15.40 |
| Energy contribution | -14.28 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.74 |
| Mean z-score | -0.01 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11245810 96 - 23011544 -----AAUAGGAUCCCCC-UUGAAAAGCGGGCGAUGGCAUGCUGUAGCGCCAUCUCUAUCCCUUUCACUCGCUUUUCUAUGCGUGGCUGCGUCUGUAUGUGU -----...(((.....))-).((((((((((.((((((..((....)))))))).............))))))))))((((((.(((...)))))))))... ( -25.84, z-score = -0.06, R) >droSim1.chr2L 11063003 97 - 22036055 -----AAUAGGAUCCCCCUUUGGAAAGCGGGCGAUGGCAUGCUGUAGCGCCAUCUCUAUUCCUUUCACUCGCUUUGCUAUGCGUGGCUGCGUCUGUAUGUGU -----...((((..((((((....))).))).((((((..((....)))))))).....))))..((..(((...((((....)))).)))..))....... ( -26.30, z-score = 0.67, R) >droSec1.super_3 6642424 96 - 7220098 -----AAUAAGAUCCCCC-UUGGAAAGCGGGCGAUGGCAUGCUGUAGCGCCAUCUCUAUCCCUUUCACUCGCUUUGCUAUGCGUGGCUGCGUCUGUAUGUGU -----.......(((...-..)))..((((((((((((..((....))))))))................((...((((....)))).))))))))...... ( -25.50, z-score = 0.55, R) >droYak2.chr2L 7642085 96 - 22324452 -----AAUAGGAUCUCCU-UUGAAAAGCGGGCGAUGGCAUGCUGUAGCGGCAUCUCUAUCCCUUUCAUUCGCAUUGCUAUGCGUGGCUGCCUCUGUGUUUGU -----...(((....)))-..((..((((((.(((((.((((((...))))))..))))))))......(((((....)))))..)))...))......... ( -23.00, z-score = 1.41, R) >droAna3.scaffold_12916 11966907 77 + 16180835 ---------------------GGGGGGCUAAGGAUGGCAUGCUGUAGCUCUAUCUCUCUUCAUCUCCCU-ACCGCGCUAUGCGUGGUUGGCUUUCCGUG--- ---------------------((..((((((((((((...((....)).))))))..............-.((((((...))))))))))))..))...--- ( -28.40, z-score = -1.96, R) >droWil1.scaffold_180708 8047153 100 + 12563649 GCGAUGGCAAUGUUGGCACUGCGUUCAAAGGGGGCAGAAAGCUCUAUUGCUAUCACUUUUUAGCUC--UCGAUUUAAAAUAUUUUGUAUUCUCUGUCUCUAU ..((((((((((..(((.((((.((.....)).))))...))).))))))))))............--..(((....(((((...)))))....)))..... ( -22.20, z-score = -0.69, R) >consensus _____AAUAGGAUCCCCC_UUGGAAAGCGGGCGAUGGCAUGCUGUAGCGCCAUCUCUAUCCCUUUCACUCGCUUUGCUAUGCGUGGCUGCCUCUGUAUGUGU ..........................(((((((..(.(((((.((((((.........................))))))))))).)..)))))))...... (-15.40 = -14.28 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:54 2011