| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,876,611 – 12,876,704 |
| Length | 93 |
| Max. P | 0.507404 |
| Location | 12,876,611 – 12,876,704 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 62.93 |
| Shannon entropy | 0.66719 |
| G+C content | 0.46589 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -9.05 |
| Energy contribution | -7.30 |
| Covariance contribution | -1.75 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12876611 93 - 22422827 CAUUUUCGGGCUAAACUAAGUUAGCCAGUUGGAAAGCUGAAAAGUUUUCGCUGGAACACCGGACACA-AGAGCAGACAGCCACAGAAUACUGGG------ ........((((((......)))))).(((((((((((....)))))))(((((....)))).)...-........))))..(((....)))..------ ( -24.80, z-score = -1.63, R) >droSim1.chrU 4051346 98 + 15797150 CAUUUUCGGGCUAAACUAAGUUAGCCAGUUGGAAAGCUGAAAAGUUUUCGCUGGAACACCGGACACA-AGAGCAGAUAGCCACAGAGUACUGGAC-UUGC ....((((((((((......)))))((((..(((((((....))))))))))).....)))))..((-((.((.....))..(((....)))..)-))). ( -25.80, z-score = -1.02, R) >droSec1.super_21 618969 99 - 1102487 CAUUUUCGGGCUAAACUAAGUUAGCCAGUUGGAAAGCUGAAAAGUUUUCGCUGGAACACCGGACACA-AGAGCAGCUAGCCACAGAGUACUGGACUUUGC ........((((((......))))))((((((((((((....)))))))(((((....)))).)...-....))))).....((((((.....)))))). ( -28.80, z-score = -1.37, R) >droAna3.scaffold_13117 3805639 75 - 5790199 CAUUUUCAGGCUAAACUAAGUUAGUUGGCUG------CAAAAACUUUCCGCCGUUGCACUGGAUAAGCCAAACGGAUGGGA------------------- ..((((..((((((.(((...))))))))).------.))))...((((((((((....(((.....)))))))).)))))------------------- ( -16.90, z-score = 0.18, R) >dp4.chrXL_group3a 1153814 93 + 2690836 CGUUUUCAGGCUAAACUAACUUAGUUUGCUG------CAAACUUUCCCAGAAAGAGAGCUGGACACAGGGCAGAGA-AAACACAGCACACAGCAUACAGC .(((((((((((((......))))))).(((------(...(((((.......)))))(((....))).)))).))-))))...((.....))....... ( -22.20, z-score = -1.26, R) >droPer1.super_52 284847 93 - 549863 CGUUUUCAGGCUAAACUAACUUAGUUUGCUG------CAAACUUUCCCAGAAAGAGAGCUGGACACAGGGCAGAGA-AAACACAGCACACAGCAUACAGC .(((((((((((((......))))))).(((------(...(((((.......)))))(((....))).)))).))-))))...((.....))....... ( -22.20, z-score = -1.26, R) >consensus CAUUUUCAGGCUAAACUAAGUUAGCCAGCUG______CAAAAAGUUUCCGCUGGAACACCGGACACA_AGAACAGAUAGCCACAGAAUACUGGA____GC ....((((((((((......)))))((((....................)))).....)))))..................................... ( -9.05 = -7.30 + -1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:38 2011