| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,860,351 – 12,860,449 |
| Length | 98 |
| Max. P | 0.709520 |
| Location | 12,860,351 – 12,860,449 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 92.18 |
| Shannon entropy | 0.13228 |
| G+C content | 0.45397 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -25.25 |
| Energy contribution | -25.93 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.709520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12860351 98 + 22422827 UUCUCGGUAUGGCAGCACAUAAAUCAGCUGGCUUCGCUACGUGCAUAACUAACUUAUUGCACACUUUGGGGCAGCU----AUAUUGCAAUUGUUUGCUGCCA .........((((((((.((((........((((((....(((((............)))))....)))))).((.----.....))..)))).)))))))) ( -29.60, z-score = -1.60, R) >droSim1.chrX 9790107 94 + 17042790 UUCUCGCAAUGGCGGAACAUAAAUCAGCUGGCUUCGCUUCGUGCAUAACU----UAUUGCACACUUUGGGGCAGCU----AUAUUGCAAUUGUUAGCUGCCA (((.(((....)))))).......((((((((...((((((((((.....----...))))).....))))).((.----.....))....))))))))... ( -27.90, z-score = -1.37, R) >droSec1.super_21 602700 94 + 1102487 UUCUCGCAAUGGCAGAACAUAAAUCAGCUGGCUUCGCUUCGUGCAUAACU----UAUUGCACACUUUGGGGCAGCU----AUAUUGCAAUUGUUAGCUGCCA .........((((((.(((..(((.(((((.(((((....(((((.....----...)))))....))))))))))----..))).....)))...)))))) ( -26.90, z-score = -1.09, R) >droYak2.chrX 7131797 94 + 21770863 UUCUCGCAAUGGCAGCACAUAAAUCAGCUGGCUUCGCUUCGUGCAUAACU----UAUUGCACACUUUGGGGCAGCU----AUAUUGCAAUUGUUUGCUGCCA .........((((((((.((((........((((((....(((((.....----...)))))....)))))).((.----.....))..)))).)))))))) ( -30.70, z-score = -2.11, R) >droEre2.scaffold_4690 4746488 98 - 18748788 UUCCCGCAAUGACAGCACAUAAAUCAGCUUGCCUCGCUUCGUGCAUAACU----UAUUGCACACUUUGGGGCAGCUCUGUAUAUUGCAAUUGUUUGCUGCCA .....((((((((((..........((((.((((((....(((((.....----...)))))....)))))))))))))).))))))............... ( -28.90, z-score = -1.71, R) >consensus UUCUCGCAAUGGCAGCACAUAAAUCAGCUGGCUUCGCUUCGUGCAUAACU____UAUUGCACACUUUGGGGCAGCU____AUAUUGCAAUUGUUUGCUGCCA .........((((((((.((((...((((.((((((....(((((............)))))....)))))))))).............)))).)))))))) (-25.25 = -25.93 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:35 2011