| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,853,093 – 12,853,184 |
| Length | 91 |
| Max. P | 0.762557 |
| Location | 12,853,093 – 12,853,184 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.83 |
| Shannon entropy | 0.49051 |
| G+C content | 0.45559 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -14.12 |
| Energy contribution | -14.92 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12853093 91 + 22422827 ------------AGGUAAUACCAUAUUACUAUGGCAUAG-----UGUCACCGCACUUCGGUCGCACGUUCCGUAGUGAUAAAAGCCGGGGAGACGGGGUU-UUAAACAU-------- ------------.((.....)).(((((((((((....(-----(((.((((.....)))).))))...)))))))))))((((((..(....)..))))-))......-------- ( -32.50, z-score = -3.51, R) >droSec1.super_21 595257 91 + 1102487 ------------AGGUAAUACCACAUUACUAUGGCAUAA-----UGUCACCGCUCUUCGGUCGCACGUUCCGGAGUGAUAAAAGCCGGGGAGACGGGGUU-UUAAACAU-------- ------------...(((.(((.........((((....-----.))))((((((((((((..(((........)))......))))))))).)))))).-))).....-------- ( -27.30, z-score = -1.69, R) >droYak2.chrX 7123655 99 + 21770863 ------------AGGUAAUGCCAUAUUACUAUGUCAUAA-----UGUCACCGCUCUUCGCUCGCACGUUCCGCAGUGAUAAACGCCGGGGAGACGGGGUC-UUAAACAUAAAACUAC ------------.((.....)).......(((((..(((-----..((.(((((((((((...(((........)))......).))))))).)))))..-))).)))))....... ( -21.50, z-score = 0.28, R) >droEre2.scaffold_4690 4739432 91 - 18748788 ------------AGGUAAUGCCAUAUUACUAUGGCAUAA-----UGUCGCCGCUCUUCGGUCGCACGUUUCCGAGUGAUAAAAGCCGGGGAGUCGGGGUU-UUAAGUAU-------- ------------.....((((((((....))))))))..-----...(.((((((((((((..(((........)))......))))))))).))).)..-........-------- ( -31.10, z-score = -2.30, R) >droAna3.scaffold_13117 3782590 110 + 5790199 AGGUAAUACAAUGGUUUAUAGUAUGACAUUAUAGCCAAACCGACUGUCCCAUUUAUAAAGCCACACGUUUCGAGAUGAUAAGAGCGUAAGAGAGACAAUUGUUAAAGACA------- ..((...((((((((((((((...((((................))))....)))).)))))....(((((...(((.......)))....))))).))))).....)).------- ( -15.49, z-score = 0.20, R) >consensus ____________AGGUAAUACCAUAUUACUAUGGCAUAA_____UGUCACCGCUCUUCGGUCGCACGUUCCGGAGUGAUAAAAGCCGGGGAGACGGGGUU_UUAAACAU________ ...................(((.........(((((........)))))((((((((((((..(((........)))......))))))))).)))))).................. (-14.12 = -14.92 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:34 2011