| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,851,479 – 12,851,592 |
| Length | 113 |
| Max. P | 0.992003 |
| Location | 12,851,479 – 12,851,592 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 70.07 |
| Shannon entropy | 0.57272 |
| G+C content | 0.56076 |
| Mean single sequence MFE | -42.27 |
| Consensus MFE | -18.74 |
| Energy contribution | -20.68 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.992003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12851479 113 - 22422827 UGCCAGUAUGGUGUAUGGGCGUGAAAAUGGGGAAAAUGGGGAAAAUAUGAGGAAACUGCCAGCCACAUCGGCAGGCGGUUUUUGCCGGAUGCCGUACCAUUUGCCAGCGGCAC ((((.((.(((((.((((.(((....))).((....(((.((((((...((....))(((.(((.....))).))).)))))).)))....))...)))).))))))))))). ( -41.60, z-score = -1.56, R) >droSim1.chrU 6797886 111 - 15797150 UGCCAGUG-GGUGGAUGGGCAUGAACAU-GGGAAAAUGGGGAAAAUAUGAGGAAACUGCCAGCCACAUCGGCAGGCGGUUUUUCCCGGAUGCCGUACCAUUUGCCAGCGGCAC ((((.((.-((..(((((.(((....))-)((....((((((((((...((....))(((.(((.....))).))).))))))))))....))...)))))..)).)))))). ( -48.80, z-score = -3.41, R) >droSec1.super_21 593518 111 - 1102487 UGCCAG-AUGGUGGAUGGGCGUGAAAAU-GGGAAAAUGGGGAAAAUAUGAGGAAACUGCCAGCCACAUCGGCAGGCGGUUUUUCCCGGAUGCCGUACCAUUUGCCAGCGGCAC ((((..-.(((..(((((.(((....))-)((....((((((((((...((....))(((.(((.....))).))).))))))))))....))...)))))..)))..)))). ( -50.30, z-score = -4.18, R) >droYak2.chrX 7122025 102 - 21770863 UG-CAGUG-GGUGGAUGGGCGGGAAAAU-GGGGAA------AAUAUGA--GGGCAUCGCCAGCAACAUCGGCUGGUGAUUUUUGCCGGAUGCCGUACCAUUUGCCUGCGGUAC ((-(.(..-((..(((((((((.(...(-((.(((------((((((.--...)))(((((((.......))))))))))))).)))..).)))).)))))..))..).))). ( -43.80, z-score = -3.39, R) >droEre2.scaffold_4690 4737839 108 + 18748788 UG-CAGAG-GGUGGAUGGGCGGGAAAAC-GAGAAAAUGGGGAAAACAU--GGGCCCUGCCAGCAACAUCGGCUGGUGAUUUUUGCCGGAUGCCGUACCAUUUGCCUGCAGUAC ((-((...-((..(((((((((.(...(-(.((((((((((.......--...))))((((((.......)))))).))))))..))..).)))).)))))..)))))).... ( -39.50, z-score = -1.56, R) >droAna3.scaffold_13117 3779730 88 - 5790199 -------------------------UCCCAGUGUAACCACUAGCGCCUAGGCAGCCAGCAAGCAGCCUCGGCAGGCUAUUUUCGCCGGAUGCCCGGCCACUUGUCAGUGAAAC -------------------------..((((((....))))...(((.((((.((......)).)))).))).))........(((((....)))))((((....)))).... ( -29.60, z-score = -0.84, R) >consensus UG_CAGUG_GGUGGAUGGGCGUGAAAAU_GGGAAAAUGGGGAAAAUAUGAGGAAACUGCCAGCAACAUCGGCAGGCGAUUUUUGCCGGAUGCCGUACCAUUUGCCAGCGGCAC .........(((((((((................................((((((((((.((.......)).))))))))))..(((...)))..)))))))))........ (-18.74 = -20.68 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:33 2011