| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,847,871 – 12,847,943 |
| Length | 72 |
| Max. P | 0.939447 |
| Location | 12,847,871 – 12,847,943 |
|---|---|
| Length | 72 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 64.03 |
| Shannon entropy | 0.67454 |
| G+C content | 0.30334 |
| Mean single sequence MFE | -8.88 |
| Consensus MFE | -5.09 |
| Energy contribution | -4.70 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12847871 72 - 22422827 AUACUAUUAUUAAAAAUGCUAUAUUUUUAUACAUUAAAAAGUAAACCCAUUUUAAUGGCACUUGUCGCCGUG ............((((((...(((((((........)))))))....)))))).(((((.......))))). ( -9.50, z-score = -1.07, R) >droSim1.chrX_random 3541113 72 - 5698898 GUUCUAUUAUUUAAAAUGCAAUAUUUUCAUACAUUAAAAAGUAAACCCAUUUUAAUGGCACUUGUCGCCGUG ...........(((((((...((((((..........))))))....)))))))(((((.......))))). ( -8.70, z-score = -0.82, R) >droSec1.super_21 590041 72 - 1102487 AUUGUAUUAUUUAAAAUGCAAUAUUUUCAUGCAUUAAAAAGUAAACCCAUUUUAAUGGCACUUGUCGCCGUG ......((((((..((((((.........))))))...))))))..........(((((.......))))). ( -11.10, z-score = -0.73, R) >droYak2.chrX 7118368 59 - 21770863 -------------AAGUGCCAUAUUAACAUACCUUAUAAAGUAAAUCCAUUUUAAUGGCACUUGUCGCCGUG -------------(((((((((..(((......)))((((((......)))))))))))))))......... ( -11.20, z-score = -2.14, R) >droEre2.scaffold_4690 4734520 54 + 18748788 -------------AAGUAUUAUAU-----UAUGUCAUAAAGUAAGCCAAUUUUAAUGGCACUUGUCGCCGUG -------------...........-----((((.(...((((..((((.......))))))))...).)))) ( -6.60, z-score = 0.05, R) >droAna3.scaffold_13117 3776732 67 - 5790199 AUUCUAACAUUUAAGAGUCUUUGU-----UCCAACAUCCAAACAACAAAUAACAAAAGAUUUCUUUUCUGUG ......(((...((((((((((((-----(....................))).))))).)))))...))). ( -6.15, z-score = -0.50, R) >consensus AUUCUAUUAUUUAAAAUGCUAUAUUUUCAUACAUUAAAAAGUAAACCCAUUUUAAUGGCACUUGUCGCCGUG ......................................................(((((.......))))). ( -5.09 = -4.70 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:32 2011