| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,242,662 – 11,242,756 |
| Length | 94 |
| Max. P | 0.952019 |
| Location | 11,242,662 – 11,242,756 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 89.31 |
| Shannon entropy | 0.18360 |
| G+C content | 0.52512 |
| Mean single sequence MFE | -28.36 |
| Consensus MFE | -24.22 |
| Energy contribution | -25.34 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11242662 94 - 23011544 GGACCGAAAGUGUCUCCGUCUCUAGCACUUUUGCCACUUUGUUGCCCAGCAGCCUUCAUGCAUACGAGUCCA--UAUAUCAGCUCGUAUAGGCCAG ((.((((((((((...........))))))))((......(((((...)))))......))((((((((...--.......)))))))).)))).. ( -24.40, z-score = -1.82, R) >droSim1.chr2L 11041897 85 - 22036055 GGACCGAAAGUGUCUCCGGCUCUGGCACUU-----------UUGCCCAGCAGCCUUCCUGCAUACGAGUCCAUAUAUAUCAGCUCGUAUAGGCCAG (((((....).))))..((((..((((...-----------.))))..((((.....))))((((((((..((....))..)))))))).)))).. ( -28.10, z-score = -2.50, R) >droSec1.super_3 6639361 96 - 7220098 GGACCGAAAGUGUCUCCGGCUCUGGCACUUUUGCCACUUUGUUGCCCAGCAGCCUUCCUGCAUACGAGUCCAUAUAUAUCAGCUCGUAUAGGCCAG (((((....).))))..((((.(((((....)))))............((((.....))))((((((((..((....))..)))))))).)))).. ( -29.50, z-score = -2.02, R) >droYak2.chr2L 7638861 94 - 22324452 GGACCGAAAGUGUCUCCGGUUCUGGCACUUUUGCCACUUUGUUGCCCAGCAGCCUUCCUGCAGACGAGUACA--UAUAUCUACUCGUUUAGGCCAG ((..((((((((((.........))))))))))))........(((..((((.....))))(((((((((..--......))))))))).)))... ( -30.80, z-score = -2.76, R) >droEre2.scaffold_4929 12437303 94 + 26641161 GGACCGAAAGUGUCUCCGGUUCUGGCACUUUUGCCACUUUGUUGCCCAGCAGCCUUCCUGCAGACGAGUACA--UAUAUCUACUCGUAUAGGCCAG ((..((((((((((.........))))))))))))........(((..((((.....))))..(((((((..--......)))))))...)))... ( -29.00, z-score = -2.11, R) >consensus GGACCGAAAGUGUCUCCGGCUCUGGCACUUUUGCCACUUUGUUGCCCAGCAGCCUUCCUGCAUACGAGUCCA__UAUAUCAGCUCGUAUAGGCCAG ((..((((((((((.........))))))))))))........(((..((((.....))))((((((((............)))))))).)))... (-24.22 = -25.34 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:53 2011