| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,829,858 – 12,829,965 |
| Length | 107 |
| Max. P | 0.882289 |
| Location | 12,829,858 – 12,829,965 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 50.64 |
| Shannon entropy | 0.80523 |
| G+C content | 0.41017 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -5.84 |
| Energy contribution | -7.15 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.882289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12829858 107 - 22422827 AAAUAAUUUAGCGGACUUUGACAGGGUGCCUGAUAUCGUAAAAUCGAUCAGGGAAUUCUCUGGAAAUCCAGCAGAAUUCGGGUCUUGGAAAAAGAGCGUUGAUAGAA .......((((((..((((..(((((..(((((..(((......))))))))(((((((((((....)))).)))))))...)))))...))))..))))))..... ( -34.70, z-score = -3.40, R) >droAna3.scaffold_13034 672067 94 - 2223656 -------------GACUUAGAUCGGGUACCAGAUAUAGUGAAGUGCAUGAAGGAAUUUUCGGGAAAGCCCACAGAAUUUAGUUCGUGGACAAAAACGGUAGAUCGAG -------------......((((((...))...(((.((...((.((((((.(((((((.(((....)))..)))))))..)))))).))....)).)))))))... ( -21.30, z-score = -1.18, R) >droWil1.scaffold_180943 31801 98 + 149748 AGAUAAUUGGCAUGAGGUAGAUAAAGUUCCAGACUUAGUGAAAGGUCUAAAGGAAUUCUCUGGUAAUCCAGCAGAAUUUACAACUUGGUUCGCUUCAA--------- ............(((((..(((.(((((..((((((......))))))....(((((((((((....)))).)))))))..))))).)))..))))).--------- ( -28.00, z-score = -2.56, R) >anoGam1.chrX 5467105 89 - 22145176 -------------GAGCUUGGAAAAGUUCCCGAUUUUGUAAAAGAUCUUCGAGAAUUCGAUGGUCGACAUACAGAGCUAAUGAACUGGAUAGCAGAUGUGGA----- -------------((((((....))))))(((..(((((....((((.(((......))).))))......(((..(....)..)))....)))))..))).----- ( -22.80, z-score = -1.46, R) >consensus _____________GACUUAGAUAAAGUUCCAGAUAUAGUAAAAGGUAUAAAGGAAUUCUCUGGAAAUCCAACAGAAUUUAGGACUUGGAUAAAAACAGU_GA_____ ............................((.(((((......))))).....(((((((((((....)))).))))))).......))................... ( -5.84 = -7.15 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:31 2011