| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,821,622 – 12,821,714 |
| Length | 92 |
| Max. P | 0.529189 |
| Location | 12,821,622 – 12,821,714 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 90.69 |
| Shannon entropy | 0.16163 |
| G+C content | 0.54229 |
| Mean single sequence MFE | -30.22 |
| Consensus MFE | -24.04 |
| Energy contribution | -23.88 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12821622 92 + 22422827 AUCCAUGUCCCCCGGGGCGCGGAAAACGUUUUUCCCCGACUUGGAGAUACAAACCCACCCUU-----UGAUUCUGG-CACACCAGGAUUACACAACGA .(((.(((((....))))).)))....((.(((((.......))))).))............-----(((((((((-....)))))))))........ ( -25.80, z-score = -1.43, R) >droSim1.chrX 9764043 97 + 17042790 CUCCACGUCCCCCGGGGCGCGGAAAACGUUUUUCCCCGGCUUGGAGAAUCAAACCCACCCUUUGAUUUGAUUCUGG-CACACCAGGAUUACACAACGA (((((.(....((((((.(((.....)))....))))))).)))))(((((((.......)))))))(((((((((-....)))))))))........ ( -31.60, z-score = -2.16, R) >droSec1.super_21 570870 97 + 1102487 CUCCACGUCCCCCGGGGCGCGGAAAACGUUUUUGCCCGGCUUGGAGAAUCAAACCCACCCUUUGAUUCGAUUCUGG-CACACCAGGAUUACAUAACGA .(((.(((((....))))).)))...((((..((...........((((((((.......))))))))((((((((-....)))))))).)).)))). ( -31.90, z-score = -2.06, R) >droYak2.chrX 7098684 96 + 21770863 AUUCAUGUCCCCCGGGGCGCGGAAAACGUUUUUCCCCGGCUUGGAGAAUCAAACCCACCCUUUU-UCUGAUUCUGG-CACACCAGGAUUACACAACGA .....(.(((.((((((.(((.....)))....))))))...))).).................-..(((((((((-....)))))))))........ ( -26.60, z-score = -0.81, R) >droEre2.scaffold_4690 4716591 92 - 18748788 AUCCAUGUCCCCCGGGGCGCGGAAAACGUUUUUCCC-GGCCUGGGGAAUCAAACCCACCCUU-----UGAUUCUGGGCACACCAGGAUUACACAACGA .....(((.(((((((.((.(((((.....))))))-).)))))))................-----(((((((((.....))))))))).))).... ( -35.20, z-score = -1.94, R) >consensus AUCCAUGUCCCCCGGGGCGCGGAAAACGUUUUUCCCCGGCUUGGAGAAUCAAACCCACCCUUU__U_UGAUUCUGG_CACACCAGGAUUACACAACGA .(((.(((((....))))).)))...(((((((((.......)))))....................(((((((((.....)))))))))...)))). (-24.04 = -23.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:30 2011