Locus 14346

Sequence ID dm3.chrX
Location 12,807,473 – 12,807,545
Length 72
Max. P 0.864917
window19752

overview

Window 2

Location 12,807,473 – 12,807,545
Length 72
Sequences 8
Columns 77
Reading direction forward
Mean pairwise identity 84.95
Shannon entropy 0.28894
G+C content 0.37053
Mean single sequence MFE -17.81
Consensus MFE -13.87
Energy contribution -13.95
Covariance contribution 0.08
Combinations/Pair 1.30
Mean z-score -1.76
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.97
SVM RNA-class probability 0.864917
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12807473 72 + 22422827
UUAUAUAUGGCCACUGAUUCGAUCGAUUUGU-----GGUGGCAUAUAGAUUAACUGAUUUGCCAUUCAGCUGAUUAG
...((((((.((((((..((....))....)-----)))))))))))(((((.((((........)))).))))).. ( -18.90, z-score =  -2.07, R)
>droPer1.super_52 195123 76 + 549863
-UACAUAUAUCCACAUACGGAACCGAUUUGUUGCAGGGAGGAAUAUGGAUUAACUGAUUUUCCAUUCAGCUGAUUAA
-..(((((.(((....(((((.....))))).....)))...)))))(((((.((((........)))).))))).. ( -14.70, z-score =  -0.87, R)
>dp4.chrXL_group3a 1068328 77 - 2690836
UUAUAUACUCCUAUGUACGGAACCGAUUUGUUGCAGGGAGGAAUAUGGAUUAACUGAUUUUCCAUUCAGCUGAUUAA
.(((((.(((((.((((((((.....)))).)))))))))..)))))(((((.((((........)))).))))).. ( -18.10, z-score =  -1.74, R)
>droAna3.scaffold_13117 3741093 70 + 5790199
--UUAUGUAGCCACUGAUUCAAUCGAUUUGU-----GGUGGCAUAUAGAUUAACUCAUUUGCUAUUCAGCUGAUUAG
--.(((((.(((((.((((.....)))).))-----))).)))))........((.(((.(((....))).))).)) ( -15.20, z-score =  -1.11, R)
>droEre2.scaffold_4690 4701975 72 - 18748788
UUAUAUAUGGCCACUGAUUCGAUCGAUUUGU-----GGUGGCAUAUAGAUUAACUGAUUUGCCAUUCAGCUGAUUAG
...((((((.((((((..((....))....)-----)))))))))))(((((.((((........)))).))))).. ( -18.90, z-score =  -2.07, R)
>droYak2.chrX 7082754 72 + 21770863
UUAUAUAUGGCCACUGAUUCGAUCGAUUUGU-----GGUGGCAUAUAGAUUAACUGAUUUGCCAUUCAGCUGAUUAG
...((((((.((((((..((....))....)-----)))))))))))(((((.((((........)))).))))).. ( -18.90, z-score =  -2.07, R)
>droSec1.super_21 557477 72 + 1102487
UUAUAUAUGGCCACUGAUUCGAUCGAUUUGU-----GGUGGCAUAUAGAUUAACUGAUUUGCCAUUCAGCUGAUUAG
...((((((.((((((..((....))....)-----)))))))))))(((((.((((........)))).))))).. ( -18.90, z-score =  -2.07, R)
>droSim1.chrU 15144116 72 - 15797150
UUAUAUAUGGCCACUGAUUCGAUCGAUUUGU-----GGUGGCAUAUAGAUUAACUGAUUUGCCAUUCAGCUGAUUAG
...((((((.((((((..((....))....)-----)))))))))))(((((.((((........)))).))))).. ( -18.90, z-score =  -2.07, R)
>consensus
UUAUAUAUGGCCACUGAUUCGAUCGAUUUGU_____GGUGGCAUAUAGAUUAACUGAUUUGCCAUUCAGCUGAUUAG
...(((((.((((((....(((.....)))......)))))))))))(((((.((((........)))).))))).. (-13.87 = -13.95 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:29 2011