| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,786,062 – 12,786,164 |
| Length | 102 |
| Max. P | 0.559966 |
| Location | 12,786,062 – 12,786,164 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.24 |
| Shannon entropy | 0.37684 |
| G+C content | 0.47060 |
| Mean single sequence MFE | -31.66 |
| Consensus MFE | -18.11 |
| Energy contribution | -17.43 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12786062 102 - 22422827 UCCUCCGAUCUUGCAAUCUUG---GUGAACUUGAGCGCAUUGCGAUGUGCUCAUAUAUUUCUUGCUGCUCGUUGAGGAUGAUGGGAAAACUCGUUUUU-CGUUGCA-------- ((((((((.(..((((....(---(....))(((((((((....)))))))))........)))).).)))..))))).((((..(((.....)))..-))))...-------- ( -28.50, z-score = -1.17, R) >droSim1.chrX 9752632 102 - 17042790 UCCUCCGAUCUUGCAAUCUUG---GUGAACUUGAGCGCAUUGCGAUGUGCUCAUAUAUUUCUUGCUGCUCGUUGAGGAUGAUGGGAAAACUCGUUUUU-CGUUGCA-------- ((((((((.(..((((....(---(....))(((((((((....)))))))))........)))).).)))..))))).((((..(((.....)))..-))))...-------- ( -28.50, z-score = -1.17, R) >droSec1.super_21 535667 102 - 1102487 UCCUCCGAUCUUGCAAUCUUG---GUGAACUUGAGCGCAUUGCGAUGUGCUCAUAUAUUUCUUGCUGCUCGUUGAGGAUGAUGGGAAAACUCGUUUUU-CGCUGCA-------- ((((((((.(..((((....(---(....))(((((((((....)))))))))........)))).).)))..))))).....((((((....)))))-)......-------- ( -27.10, z-score = -0.58, R) >droYak2.chrX 7061840 102 - 21770863 UCCUCCGAUCUUGCAAUCUUG---GUGAACUUGAGCGCAUUGCGAUGUGCUCAUAUAUUUCUUGCUGGUCGUUGAGGAUGAUGGGAAAACUCGUUUUU-CGUUGCA-------- ((((((((((..((((....(---(....))(((((((((....)))))))))........)))).)))))..))))).((((..(((.....)))..-))))...-------- ( -32.50, z-score = -2.34, R) >droEre2.scaffold_4690 4680934 102 + 18748788 UCCUCCGAUCUUGCAAUCUUG---GUGAACUUGAGCGCAUUGCGAUGUGCUCAUAUAUUUCUCGCUGGUCGUUGGGGAUGAUGGGAAAACUCGUUUUU-CGUUGCA-------- ((((((((((..((......(---(....))(((((((((....)))))))))..........)).)))))..))))).((((..(((.....)))..-))))...-------- ( -30.40, z-score = -1.34, R) >dp4.chrXL_group3a 1044676 101 + 2690836 --CUUCGCUCCAAGGAGAGGGAACGUGAACUUGAGCGCAUUGCGAUGCGCUCAUAUAUU---------CGAGCGAAAAUG--GGAGAAACUCGUUUUUGCAUUGCAGAGCUCCG --....((((.(((....(....).....)))))))((.(((((((((((((.......---------.))))(((((((--((.....)))))))))))))))))).)).... ( -37.30, z-score = -2.56, R) >droPer1.super_52 171017 101 - 549863 --CUUCGCUCCAAGGAGAGGGAACGUGAACUUGAGCGCAUUGCGAUGCGCUCAUAUAUU---------CGAGCGAAAAUG--GGAGAAACUCGUUUUUGCAUUGCAGAGCUCCG --....((((.(((....(....).....)))))))((.(((((((((((((.......---------.))))(((((((--((.....)))))))))))))))))).)).... ( -37.30, z-score = -2.56, R) >consensus UCCUCCGAUCUUGCAAUCUUG___GUGAACUUGAGCGCAUUGCGAUGUGCUCAUAUAUUUCUUGCUGCUCGUUGAGGAUGAUGGGAAAACUCGUUUUU_CGUUGCA________ ((((.((((...............(....).(((((((((....))))))))).................))))))))....(.(((((....))))).).............. (-18.11 = -17.43 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:28 2011