| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,783,009 – 12,783,112 |
| Length | 103 |
| Max. P | 0.525477 |
| Location | 12,783,009 – 12,783,112 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.29 |
| Shannon entropy | 0.47048 |
| G+C content | 0.36476 |
| Mean single sequence MFE | -22.30 |
| Consensus MFE | -10.21 |
| Energy contribution | -9.03 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12783009 103 - 22422827 AUGCUGGGGAUCUUGUAUCGUUUUUU-CUUCUUUAUUUUCUUUAUAAUAUUUCUCCAUUGUUUGGCCCACACAAACAGGGCCGAAAGAUAAUGGAUUCGGCUCA- ..(((((..((.(((((.........-...............))))).))..)(((((((((((((((.........))))))...)))))))))..))))...- ( -26.56, z-score = -2.39, R) >droSim1.chrX 9749466 103 - 17042790 AUGCUGGAGAUCUUGUAUCGUUUUUU-UCUUCUCUUUUUUUUUUUAAUAUUUCUCCAUUGUUUGCCCCACACAAACAGGGCCGAAAGAUAAUGGAUUCGGCUCA- ..((((((((................-...))))...................((((((((((((((..........))))....))))))))))..))))...- ( -21.61, z-score = -1.33, R) >droSec1.super_21 532764 102 - 1102487 AUGCUGGAGAUCUUGUAUCGUUUUUU--UUUCUUCUUUUUUUUUUAAUAUUUCUCCAUUGUUUGGCCCACACAAACAGGGCCGAAAGAUAAUGGAUUCGGCUCA- ..(((((((((.....))).......--.........................(((((((((((((((.........))))))...)))))))))))))))...- ( -26.00, z-score = -2.63, R) >droYak2.chrX 7058840 104 - 21770863 AUGCUGGAGAUCUUAUUUCGUUUUUUUUCUUUUUUUUUUCCAUUUAAUAUUUCUCCAUUGUUUGCCCCACACAAACAGGCCGGAAAGAUAAUGGAUUCGGCUCA- ..((((((((.......))...................((((((.....(((((...(((((((.......)))))))...)))))...))))))))))))...- ( -21.60, z-score = -1.61, R) >droEre2.scaffold_4690 4677983 93 + 18748788 AUGCUGGAGAUCUUAUUUCGUUUUAU-----------UUUCAUUUAAUAUUUCUCCACUGUUUGCCCCACACAAACAGGCCCAAAAGAUAAUGGAUUCGGCUCA- ..((((((((...((((.........-----------........))))..))))).(((((((.......)))))))..(((........)))....)))...- ( -17.63, z-score = -1.06, R) >droWil1.scaffold_180698 10606091 104 - 11422946 AAGUUUUGGCUAUCGUUUUGUUUUUU-UCUUUUUUUCUUCUUCCUUAUAUUUGGCCAUUGAUUGGUUCGCUUGGAUAAGCGCGAACAAAGCCAAAGUAAAAACCA ..(((((.(((...(((((((((...-.........................(((((.....)))))(((((....))))).)))))))))...))).))))).. ( -20.40, z-score = -0.71, R) >consensus AUGCUGGAGAUCUUGUAUCGUUUUUU_UCUUUUUUUUUUCUUUUUAAUAUUUCUCCAUUGUUUGCCCCACACAAACAGGCCCGAAAGAUAAUGGAUUCGGCUCA_ ..((((..(((((..((((..............................((((....(((((((.......)))))))....))))))))..))))))))).... (-10.21 = -9.03 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:27 2011