| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,775,481 – 12,775,571 |
| Length | 90 |
| Max. P | 0.563266 |
| Location | 12,775,481 – 12,775,571 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 58.28 |
| Shannon entropy | 0.70076 |
| G+C content | 0.35417 |
| Mean single sequence MFE | -13.22 |
| Consensus MFE | -6.23 |
| Energy contribution | -6.07 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.77 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12775481 90 + 22422827 ACAAAAAAAAAAAAACACAUACUGCUUGUGAGCCAA-CAAUUUCACCAGUGGCAUACAAAGGGGAAAUCCCUCCGAAAACUUUCUAUAUAA .....................(..((.(((((....-....))))).))..)........((((....))))................... ( -13.30, z-score = -0.77, R) >droSec1.super_21 525101 86 + 1102487 ----AAAAAGAAAAAAACCUACUGCUUGUGAGCCAAACAAUUUCACCAGUGGCAUA-CAAGGGGAAAUCCCUCGGAAAACUUUCUAAAUAA ----....(((((....((.....((((((.((((..............)))).))-))))(((....)))..)).....)))))...... ( -18.64, z-score = -1.92, R) >droYak2.chrX 7052006 77 + 21770863 ------------AAAAAUUUACUGCAUGUGAGCCAA-AAAUUUCACCAGUGGUAUA-AAAGUGGAAAUCCCUCAGAGAACUUUUUAAAUAA ------------.......(((..(..(((((....-....)))))..)..))).(-(((((.((......)).....))))))....... ( -10.00, z-score = 0.02, R) >droEre2.scaffold_4690 4671006 76 - 18748788 -------------AAAAAGUACUGUAUGUGAGCCAA-CAAUUUCAUCAGUAGUAUA-AAGGGGGAAAUCCCUCAGAAAAGUUUCUAAAUAA -------------.....((((((...(((((....-....)))))...)))))).-..(((((....)))))((((....))))...... ( -15.40, z-score = -2.04, R) >dp4.chrXL_group3a 1031695 74 - 2690836 -------AAAAGAAGGGAAUGCUGUUAAGAUGGCAA-CAGUUUGCUGGACAGUUUGCAAGGAUCAGAC------AAAAUCUAAUUGAA--- -------.........(...((((((.((.((....-)).....)).))))))...)..((((.....------...)))).......--- ( -11.00, z-score = 0.69, R) >droPer1.super_52 157254 74 + 549863 -------AAAAGAAGGGAAUGCUGUUAAGAUGGCAA-CAGUUUGCUGGACAGUUUGCAAGGAUCAGAC------AAAAUCUAAUUGAA--- -------.........(...((((((.((.((....-)).....)).))))))...)..((((.....------...)))).......--- ( -11.00, z-score = 0.69, R) >consensus _______AAAA_AAAAAAAUACUGCUUGUGAGCCAA_CAAUUUCACCAGUAGUAUA_AAAGGGGAAAUCCCUC_GAAAACUUUCUAAAUAA ..................((((((((.(((((.........))))).)))))))).................................... ( -6.23 = -6.07 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:26 2011