| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,770,360 – 12,770,460 |
| Length | 100 |
| Max. P | 0.735099 |
| Location | 12,770,360 – 12,770,460 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 95.33 |
| Shannon entropy | 0.07490 |
| G+C content | 0.51255 |
| Mean single sequence MFE | -18.47 |
| Consensus MFE | -15.30 |
| Energy contribution | -16.80 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12770360 100 - 22422827 CGUGUCGGCCAUCCAAGGCAUUCAUCUUGCCACAAUUUCCACAUUUUCCGCAGUUUUCCUCGUUUGCUCUCUUUGCCGCCCACUUGUUUUCUUCACCGCC .(((.((((.......((((.......))))..................((((..........)))).......))))..)))................. ( -17.00, z-score = -1.76, R) >droSim1.chrX 9735650 100 - 17042790 CGUGUCGGCCAUCCAAGGCAUUCAUCUUGCCACAAUUUCCACAUUUUCCGCAGUUUUCCUCGUUUGCUCUCUUGGCCGUCCACUUGUUUUCUUCACCGCC .(((.((((((.....((((.......))))..................((((..........)))).....))))))..)))................. ( -22.40, z-score = -3.40, R) >droSec1.super_21 520124 100 - 1102487 CGUGUCGGCCAUCCAAGGCAUUCAUCUUGCCACAAUUUCCACAUUUUCCGCAGUUUUCCUCGUUUGCUCUCUUGGCCGCCCACUUGUUUUCUUCACCGCC .(((.((((((.....((((.......))))..................((((..........)))).....))))))..)))................. ( -21.90, z-score = -2.89, R) >droYak2.chrX 7046811 98 - 21770863 CAUGUCGGCCAUCCAAGGCAUUCAUCUUGCCACAAUUUCCACAUUUUCCGCAGUUUUCCUCGU--GCUCCCUUUGCCGCCCUCUUGUUUUCUUCUCCGCU .....((((.......((((.......))))..................((((.......).)--)).......))))...................... ( -12.60, z-score = -0.33, R) >consensus CGUGUCGGCCAUCCAAGGCAUUCAUCUUGCCACAAUUUCCACAUUUUCCGCAGUUUUCCUCGUUUGCUCUCUUGGCCGCCCACUUGUUUUCUUCACCGCC .(((.((((((.....((((.......))))..................((((..........)))).....))))))..)))................. (-15.30 = -16.80 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:25 2011