Locus 14336

Sequence ID dm3.chrX
Location 12,733,523 – 12,733,627
Length 104
Max. P 0.939987
window19735 window19736

overview

Window 5

Location 12,733,523 – 12,733,624
Length 101
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 61.32
Shannon entropy 0.64443
G+C content 0.32894
Mean single sequence MFE -20.66
Consensus MFE -8.74
Energy contribution -9.54
Covariance contribution 0.80
Combinations/Pair 1.28
Mean z-score -1.58
Structure conservation index 0.42
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.24
SVM RNA-class probability 0.915197
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12733523 101 - 22422827
----------------UUUACCACAUAACGUUUUAUUUCAAAUCCACAAA-AAGUGAAAACUUUUAGCUAACUGCGGUGCUGUAGUUGUUAAUUAGGAUUGUUUAGUUCCUAAAUUGG
----------------....(((.................(((((...((-((((....))))))(((.(((((((....)))))))))).....)))))((((((...))))))))) ( -19.90, z-score =  -1.21, R)
>droSim1.chrX 10552388 117 - 17042790
UUUACCACAGAAAUCCUUAACAAAAGCACGUUCUAUUUAAAAUCCACAAA-AAGUGAAAACUUUUGGCUAAAUGCGGUGCUGUAGUUGUUAAUUAGGAUUGUUUAGUUUCUGAAUUGG
....(((((((((((((((((((.(((((...................((-((((....)))))).((.....)).)))))....))))))...)))))........)))))...))) ( -26.80, z-score =  -2.03, R)
>droSec1.super_21 484615 118 - 1102487
UUUACCACAGAAAUCCUUAACAAAAGCACGUUUUAUUUAAAAUCCACAAACAAGUGAAAACUUUUGGCUAACUGCGGUGCUGUAGUUGUUAAUUAGGAUUGCUUAGUUCCUGAAUUGG
....(((.........(((((((.(((((.................((((..(((....)))))))((.....)).)))))....)))))))((((((.........))))))..))) ( -24.80, z-score =  -0.94, R)
>droYak2.chrX 7010327 83 - 21770863
---------------------------------UAGUUAGAAUCUACGA--AAUUAAAACUUUUCAGCUAACUGUGAUUUCGUAGUUGUUAAUUAGGAUUGUUUAAUGCCUGAAUCUG
---------------------------------(((((((...((((((--(((((........(((....))))))))))))))...)))))))(((((............))))). ( -16.60, z-score =  -1.86, R)
>droEre2.scaffold_4690 4629826 79 + 18748788
----------------------------UUUACCACAGAAAUCCUUUACAACAGCACGACUUAUUAGCUAAAUGCG--------GUUGUUAAUUAGGAU---UUUGUUCCUGAAUCUG
----------------------------.......((((..........((((((.((..(((.....)))...))--------))))))..((((((.---.....)))))).)))) ( -15.20, z-score =  -1.86, R)
>consensus
________________UU_AC_A_A__ACGUUCUAUUUAAAAUCCACAAA_AAGUGAAAACUUUUAGCUAACUGCGGUGCUGUAGUUGUUAAUUAGGAUUGUUUAGUUCCUGAAUUGG
...............................................................(((((.(((((((....))))))))))))((((((.........))))))..... ( -8.74 =  -9.54 +   0.80)

alignment

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secondary structure

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dotplot

Postscript

Window 6

Location 12,733,526 – 12,733,627
Length 101
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 60.43
Shannon entropy 0.66410
G+C content 0.31862
Mean single sequence MFE -19.82
Consensus MFE -8.74
Energy contribution -9.54
Covariance contribution 0.80
Combinations/Pair 1.28
Mean z-score -1.49
Structure conservation index 0.44
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.44
SVM RNA-class probability 0.939987
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12733526 101 - 22422827
----------------CAUUUUACCACAUAACGUUUUAUUUCAAAUCCACAAA-AAGUGAAAACUUUUAGCUAACUGCGGUGCUGUAGUUGUUAAUUAGGAUUGUUUAGUUCCUAAAU
----------------...........................(((((...((-((((....))))))(((.(((((((....)))))))))).....)))))((((((...)))))) ( -18.30, z-score =  -1.06, R)
>droSim1.chrX 10552391 117 - 17042790
CAUUUUACCACAGAAAUCCUUAACAAAAGCACGUUCUAUUUAAAAUCCACAAA-AAGUGAAAACUUUUGGCUAAAUGCGGUGCUGUAGUUGUUAAUUAGGAUUGUUUAGUUUCUGAAU
..........((((((((((((((((.(((((...................((-((((....)))))).((.....)).)))))....))))))...)))))........)))))... ( -26.20, z-score =  -2.13, R)
>droSec1.super_21 484618 118 - 1102487
CAUUUUACCACAGAAAUCCUUAACAAAAGCACGUUUUAUUUAAAAUCCACAAACAAGUGAAAACUUUUGGCUAACUGCGGUGCUGUAGUUGUUAAUUAGGAUUGCUUAGUUCCUGAAU
...........((.((((((((((((.(((((.................((((..(((....)))))))((.....)).)))))....))))))...)))))).))............ ( -23.30, z-score =  -0.80, R)
>droYak2.chrX 7010330 83 - 21770863
---------------------------------AGUUAGUUAGAAUCUACGA--AAUUAAAACUUUUCAGCUAACUGUGAUUUCGUAGUUGUUAAUUAGGAUUGUUUAAUGCCUGAAU
---------------------------------..((((((((...((((((--(((((........(((....))))))))))))))...))))))))................... ( -16.40, z-score =  -1.61, R)
>droEre2.scaffold_4690 4629829 79 + 18748788
----------------------------GAUUUUACCACAGAAAUCCUUUACAACAGCACGACUUAUUAGCUAAAUGCG--------GUUGUUAAUUAGGAU---UUUGUUCCUGAAU
----------------------------...((((.....((((((((....((((((.((..(((.....)))...))--------))))))....)))))---))).....)))). ( -14.90, z-score =  -1.86, R)
>consensus
___________________UU_AC_A_AGAACGUUUUAUUUAAAAUCCACAAA_AAGUGAAAACUUUUAGCUAACUGCGGUGCUGUAGUUGUUAAUUAGGAUUGUUUAGUUCCUGAAU
..................................................................(((((.(((((((....))))))))))))((((((.........)))))).. ( -8.74 =  -9.54 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:16 2011