| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,723,412 – 12,723,509 |
| Length | 97 |
| Max. P | 0.541530 |
| Location | 12,723,412 – 12,723,509 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.34 |
| Shannon entropy | 0.46634 |
| G+C content | 0.56528 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -10.46 |
| Energy contribution | -10.42 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12723412 97 - 22422827 AUGGUCAAGUGCUUCGGCCUGUGCCAGUGCCCUGCGCU--UUCACCCACCUCCACUUCCGGUCCGCUUUGCGCU-UUUUCCACUCUCU-UCAUCACCACCC------ .(((..((((((...(((..(((..(((((...)))))--..)))..(((.........)))..)))..)))))-)...)))......-............------ ( -20.70, z-score = -1.50, R) >droSim1.chrX 10542636 95 - 17042790 AUGGUCAAGUGCUUUGGCCUGUGCCA--GCCCAGCACU--UUCACCCACCUCCGCUUCCGGUCCGCUUUGCGCU-UUCUCCACUCUCG-UCAUCCCCACCC------ .(((..((((((...(((..((((..--.....)))).--...........(((....)))...)))..)))))-)...)))......-............------ ( -19.60, z-score = -1.01, R) >droSec1.super_21 474555 93 - 1102487 --GGUCAAGUGCUUUGGCCUGUGCCA--GCCCAGCACU--UUCACCCACCUCCGCUUCCGGUCCGCUUUGCGCU-UUCUCCACUCUCU-UCAUCCCCACCC------ --((..((((((...(((..((((..--.....)))).--...........(((....)))...)))..)))))-)...)).......-............------ ( -18.90, z-score = -1.36, R) >droEre2.scaffold_4690 4620638 89 + 18748788 AUGGUCAAGUACUUUGGCCUGUGCCA--GACCUGCACU--UUCACCCACCUCCGCUUCGGGUGCGCUUUGUGCU-UUCUCCACUCUCU-UCGCCC------------ .(((..((((((...(((..((((..--.....)))).--..(((((...........))))).)))..)))))-)...)))......-......------------ ( -22.60, z-score = -1.33, R) >droAna3.scaffold_13117 3653705 104 - 5790199 AUGGUCAAGUGCUCUGCCAUUUGCC---AUUUAGCAUUUAUCCACUCCCCGGCACGACGAGUCCUUUUUAUUUUAUUCCCCUCCCUCUACUGUUGUUGUCCUUUUUU .(((..(((((((..((.....)).---....)))))))..)))......((.(((((((................................)))))))))...... ( -14.95, z-score = -1.33, R) >consensus AUGGUCAAGUGCUUUGGCCUGUGCCA__GCCCAGCACU__UUCACCCACCUCCGCUUCCGGUCCGCUUUGCGCU_UUCUCCACUCUCU_UCAUCCCCACCC______ ..((...(((((...(((..((((.........))))......(((.............)))..)))..))))).....)).......................... (-10.46 = -10.42 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:14 2011