| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,720,009 – 12,720,117 |
| Length | 108 |
| Max. P | 0.814926 |
| Location | 12,720,009 – 12,720,117 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 60.40 |
| Shannon entropy | 0.78247 |
| G+C content | 0.34403 |
| Mean single sequence MFE | -23.77 |
| Consensus MFE | -4.79 |
| Energy contribution | -5.98 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12720009 108 + 22422827 AACGGAACUCAAGCACAAUUGGAUACUAACUGAUUCAAUUGUGUUCAUUUCGUAUAUGAAUAUUGAACUGAUUGAGGUCUAGUAAGAUUUUAAAUCCUCA--AGUCUUCA .((((((....(((((((((((((........)))))))))))))..))))))...((((..((((...(((((((((((....))))))).)))).)))--)...)))) ( -27.20, z-score = -2.56, R) >droSim1.chrX 10539689 100 + 17042790 AACGGAACUCAAGCACACUUGGAUACUAACUGAUUCAAUUGUGCUCAUUUCGUAUAUGCAUAUUGAA--GAUUU--------UAAAACCUUAAGUCUUCAGCAGACUGCA .((((((....((((((.((((((........)))))).))))))..))))))...((((..(((((--(((((--------.........)))))))))).....)))) ( -26.60, z-score = -3.57, R) >droSec1.super_21 471252 100 + 1102487 AACGGAACUCAAGCACAAUUGGAUACUAACUUAUUCAACUGUGCUCAUUUCGUAUAUGCAUAUUGAA--GAUUU--------UAAAACCUUAAGUCUUCAGCAGUCUGCA .((((((....((((((.(((((((......))))))).))))))..))))))...((((.((((((--(((((--------.........)))))))))...)).)))) ( -27.70, z-score = -4.34, R) >droYak2.chrX 6996518 109 + 21770863 AACGGAACUCAAGCACAAUUGCUUGUUAACUGAUUCAAUUGUGUUCAUUUUGUAUAUGUAUAUUGAACUUAUUGAGAUCCAGUAAGAUUUGAAUCCUUCAA-GUUCUUCA ...((((((((((((....))))))......(((((((.....((((...((((....)))).))))(((((((.....)))))))..))))))).....)-)))))... ( -24.60, z-score = -1.96, R) >droEre2.scaffold_4690 4617364 88 - 18748788 AACGGAACUCAAGC--------------------UCAAUUGUGUACAUUUUGUAUAUGGAUAUUAAACUGAUUGAGGUCCAGUAAGAUUUUAAAACUUCA--AGUCCUUA ...(((....(((.--------------------....(..(((((.....)))))..)............((((((((......))))))))..)))..--..)))... ( -13.40, z-score = 0.34, R) >droAna3.scaffold_13117 3648515 100 + 5790199 GACAGGA-UCAAUCAGGGCAAGUGCCUGCCC--UUGGUACUUGUUUAUUUUCUAAUUUAAGACCCUGCCAGCAAGGACUAUUUUCUAUUUUAAAUUCCUCUUG------- ..(((((-.....(((((((((((((.....--..)))))))).......(((......)))))))).......(((..((((........))))))))))))------- ( -23.10, z-score = -1.25, R) >consensus AACGGAACUCAAGCACAAUUGGAUACUAACUGAUUCAAUUGUGUUCAUUUCGUAUAUGAAUAUUGAACUGAUUGAG_UC_AGUAAGAUUUUAAAUCUUCA__AGUCUUCA .((((((....((((((.((((............)))).))))))..))))))......................................................... ( -4.79 = -5.98 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:13 2011