| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,719,388 – 12,719,439 |
| Length | 51 |
| Max. P | 0.988102 |
| Location | 12,719,388 – 12,719,439 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 55.88 |
| Shannon entropy | 0.61877 |
| G+C content | 0.44992 |
| Mean single sequence MFE | -15.07 |
| Consensus MFE | -9.00 |
| Energy contribution | -8.23 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12719388 51 + 22422827 ----UGCCUGCUCGUG-UGUGGGUGUAUAUCAAAA-UUUGU-CACGCCCACACCCAGA ----...(((...(.(-((((((((((((......-..)))-.)))))))))))))). ( -18.60, z-score = -3.10, R) >droAna3.scaffold_13117 3647842 56 + 5790199 CUGAUAUAUAUAUGUGAUAUGUAUGUAUAAGAACCAUAUGAGCACGUUCGUCCUUA-- ((.(((((((((((...))))))))))).)).......((((.((....)).))))-- ( -8.70, z-score = 0.03, R) >droYak2.chrX 6995903 54 + 21770863 --AGUCUGCGCGCGUG-UGUGGGUGUAUAUCAAAAAUUUGU-CACGCCCACACGAGGA --............((-(((((((((....(((....))).-.))))))))))).... ( -17.90, z-score = -1.41, R) >consensus ____UAUAUGCACGUG_UGUGGGUGUAUAUCAAAAAUUUGU_CACGCCCACACCAAGA ..................((((((((.................))))))))....... ( -9.00 = -8.23 + -0.77)
| Location | 12,719,388 – 12,719,439 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 55.88 |
| Shannon entropy | 0.61877 |
| G+C content | 0.44992 |
| Mean single sequence MFE | -11.63 |
| Consensus MFE | -5.55 |
| Energy contribution | -5.67 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12719388 51 - 22422827 UCUGGGUGUGGGCGUG-ACAAA-UUUUGAUAUACACCCACA-CACGAGCAGGCA---- .((.((((((((.(((-.((..-...))...))).))))))-).).))......---- ( -15.30, z-score = -1.52, R) >droAna3.scaffold_13117 3647842 56 - 5790199 --UAAGGACGAACGUGCUCAUAUGGUUCUUAUACAUACAUAUCACAUAUAUAUAUCAG --(((((((...((((....)))))))))))........................... ( -4.50, z-score = 0.59, R) >droYak2.chrX 6995903 54 - 21770863 UCCUCGUGUGGGCGUG-ACAAAUUUUUGAUAUACACCCACA-CACGCGCGCAGACU-- .....(((((((.(((-.(((....)))...))).))))))-).............-- ( -15.10, z-score = -1.81, R) >consensus UCUAAGUGUGGGCGUG_ACAAAUUUUUGAUAUACACCCACA_CACGAGCACACA____ .......(((((.(((..((......))...))).))))).................. ( -5.55 = -5.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:13 2011