| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,675,050 – 12,675,160 |
| Length | 110 |
| Max. P | 0.979648 |
| Location | 12,675,050 – 12,675,160 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.30 |
| Shannon entropy | 0.35131 |
| G+C content | 0.52472 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -23.71 |
| Energy contribution | -23.17 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12675050 110 - 22422827 GGGCUUGGUUUGGUUUCUCCAUCGAGAGAUGGGCGAUGCCAUCGCCAAACGGCGAUGAUUAUGGUCAACGAUGCAAUCGGCUGGCCAAUCGAUCCACUCAAUAGCUAAUC .((((..(..(((....((((((....))))))((((..(((((((....)))))))....((((((.((((...))))..))))))))))..)))..)...)))).... ( -42.30, z-score = -2.78, R) >droSec1.super_21 429612 107 - 1102487 UGGUUUGGCUUGGUUGCUCCAUCGCGAGAU-GGCAUCGCCUUCGCCAAACGG--GUGAUUAUGGUCAACGAUGCAAUCGGCUGGCCAAUCGAUCCACUCAAUGGCUAAUC ..(((((((..(((....(((((....)))-))....)))...)))))))((--((((((.((((((.((((...))))..))))))...))).)))))........... ( -40.30, z-score = -2.32, R) >droEre2.scaffold_4690 4576550 86 + 18748788 --GGUUGGCUUGGGUGCUCCAUCGAGAGAUGG----------------------UUGAUUAUGGCCAACGACGCAAUCGGAUGGUCAAUCGAUCCACUCCAUGGCUAAUC --((((((((((((((..(((((....)))))----------------------(((((..((((((.(((.....)))..)))))))))))..))).))).)))))))) ( -34.40, z-score = -2.88, R) >consensus _GGCUUGGCUUGGUUGCUCCAUCGAGAGAUGGGC___GCC_UCGCCAAACGG__AUGAUUAUGGUCAACGAUGCAAUCGGCUGGCCAAUCGAUCCACUCAAUGGCUAAUC ....(((((((((.....(((((....))))).......................((((..((((((.(((.....)))..))))))))))..)))......)))))).. (-23.71 = -23.17 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:07 2011