Locus 14328

Sequence ID dm3.chrX
Location 12,670,188 – 12,670,278
Length 90
Max. P 0.797423
window19724

overview

Window 4

Location 12,670,188 – 12,670,278
Length 90
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 76.13
Shannon entropy 0.41904
G+C content 0.38910
Mean single sequence MFE -22.78
Consensus MFE -14.82
Energy contribution -16.18
Covariance contribution 1.36
Combinations/Pair 1.27
Mean z-score -1.46
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.72
SVM RNA-class probability 0.797423
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12670188 90 + 22422827
UUAGGUAGAUGUAAAUGUAUAU--GCUAUAUC---UGCUGGCUCUACCGAUUCGAUUUGGAUUCGGAUUCGGAUUCGGAUCACAUUGAAAGUACU
...((((((.(((.(((((...--..))))).---)))....)))))).....((((((((((((....)))))))))))).............. ( -24.60, z-score =  -1.89, R)
>droSim1.chrX 9672391 92 + 17042790
UUAGGUAGAUGUAAAUGUAUAUAUGCUAUAUC---UGCUGGCUCUACCGAUUCGAUUUGGAUUCGGUUUCGGAUUCGGAUCACAUUGAAAGUACU
...((((((((((.(((....)))..))))))---))))((..((..((((..((((((((((((....))))))))))))..))))..))..)) ( -24.80, z-score =  -1.91, R)
>droSec1.super_21 424859 92 + 1102487
UUAGGUAGAUGUAAAUGUAUAUAUGCUAUAUC---UGCUGGCUCUACCGAUUCGAUUUGGAUUCGGAUUCGGAUUCGGAUCACAUUGAAAGUACU
...((((((((((.(((....)))..))))))---))))((..((..((((..((((((((((((....))))))))))))..))))..))..)) ( -24.80, z-score =  -1.83, R)
>droEre2.scaffold_4690 4571576 90 - 18748788
UUAGGUAGAUGUAAGUGUAUAU--GCUAUAUC---UGCUGGCUCUACCGAUUCGAUUUGGAUUCGGAUUCGGAUGCGGAUCACAUUGAAAGUACU
...((((((.((.(((..((((--...)))).---.))).))))))))((((((((((((((....)))))))).)))))).............. ( -24.70, z-score =  -1.47, R)
>droVir3.scaffold_12928 2979127 78 - 7717345
UUGGUUUUUUUCAAGUAUUUUUCUAGUAUUUUGUGUGCCGACUGUACCA----GAUCUGAAGUCGGUU---GGCUUGGACUGUAU----------
..(((((.....(((((((.....))))))).....((((((((.((((----....))..)))))))---)))..)))))....---------- ( -15.00, z-score =  -0.21, R)
>consensus
UUAGGUAGAUGUAAAUGUAUAU_UGCUAUAUC___UGCUGGCUCUACCGAUUCGAUUUGGAUUCGGAUUCGGAUUCGGAUCACAUUGAAAGUACU
...((((((.(((...(((((.....)))))....)))....)))))).....((((((((((((....)))))))))))).............. (-14.82 = -16.18 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:06 2011