| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,660,718 – 12,660,824 |
| Length | 106 |
| Max. P | 0.588992 |
| Location | 12,660,718 – 12,660,824 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.57 |
| Shannon entropy | 0.29170 |
| G+C content | 0.43032 |
| Mean single sequence MFE | -33.44 |
| Consensus MFE | -16.52 |
| Energy contribution | -19.32 |
| Covariance contribution | 2.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12660718 106 - 22422827 AUGUUUUUGGGCUAGUG-UGUUUUAAGUGCUGAUAAAGCGGGAGAAAGGGGAAAUGGGCAAUUGC--UGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAU ........(((.(((((-..........(((.....)))(((((..((((((((((((((((...--...)))))...))))))))))).)))))..)))))))).... ( -32.60, z-score = -1.67, R) >droSim1.chrX 9662382 109 - 17042790 AUGUUUUUGGGCUAGUGAAGUGUUAAGUGCUGAUAAAGCGGGAGAAAGGGGAAAUGGGCAAUUGCUGUGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAU ................((((((......(((.....)))(((((..(((((((((((((....)).(((.....))).)))))))))))....)))))..))))))... ( -33.50, z-score = -1.57, R) >droSec1.super_21 416249 107 - 1102487 AUGUUUUUGGGCUAGUGAAGCGUUAAGUGCUGAUAAAGUGGGAGGAAGGGGAAAUGGGCAAUUGG--UGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAU ..((.((((((((.....))).))))).))......((((((((((((((((((((((((((...--...)))))...)))))))))))..))))))))))........ ( -40.40, z-score = -3.68, R) >droYak2.chrX 6942304 88 - 21770863 AUG-UUUUGGGUUACUGAAGUGUUAAGUGCUGAUAAAAAGAGGGA---GGGAAAUAGGCAAUUGC--UGUGU---------------GUGUUCCUUCCACUACUUUUAU (..-(((..(....)..)))..)............((((((((((---((((((((.(((.....--))).)---------------)).)))))))).)).))))).. ( -23.40, z-score = -1.87, R) >droEre2.scaffold_4690 4562457 104 + 18748788 AUG-AUGUGGGUUAGUGAAGUGUUAAGUGGCGAUAAAGAGGAGGAAAGGGGAAAU-GGCAAUUGC--UG-GUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAU ...-(((..(((.((((...((((....)))).......((((((((((((((((-(((...(((--..-...))).)))))))))))).))))))))))))))..))) ( -37.30, z-score = -3.39, R) >consensus AUGUUUUUGGGCUAGUGAAGUGUUAAGUGCUGAUAAAGAGGGAGAAAGGGGAAAUGGGCAAUUGC__UGUGUUGCACGCCAUUUCUCCUGUUCCUUCCACUACUUUUAU .........(((...(((....)))...)))........(((((..((((((((((((((((........)))))...)))))))))))....)))))........... (-16.52 = -19.32 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:05 2011