| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,642,259 – 12,642,323 |
| Length | 64 |
| Max. P | 0.515022 |
| Location | 12,642,259 – 12,642,323 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 67.57 |
| Shannon entropy | 0.47361 |
| G+C content | 0.49438 |
| Mean single sequence MFE | -4.03 |
| Consensus MFE | -3.60 |
| Energy contribution | -3.10 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.21 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12642259 64 + 22422827 UUCUCGAAAUCUAUCGCGCCCUCUCGCACUGUCUUGCCCUUUCACUCAUUGCUCUAUUAUCGUU ....(((........(((......)))........((.............)).......))).. ( -3.02, z-score = 0.65, R) >droSec1.super_21 397256 64 + 1102487 UUCUCGCAAUCUAUCGCGCCCUCUCGCACUGUCUUGCCCUUUCACUCAUUGCUCUAUUAUAGUU .....((((..((..(((......)))..))..))))........................... ( -5.10, z-score = -0.27, R) >dp4.chrXL_group1a 3441702 50 + 9151740 ----------ACCCCGUGCCC-CGCACAAAGACGAACCCUUUA---CAUUGCUCUAUUAUCGCU ----------.....((((..-.))))................---.................. ( -4.00, z-score = -0.61, R) >droPer1.super_77 193977 50 - 256778 ----------ACCCCGUGCCC-CGCACAAAGACGAACCCUUUA---CAUUGCUCUAUUAUCGCU ----------.....((((..-.))))................---.................. ( -4.00, z-score = -0.61, R) >consensus __________ACACCGCGCCC_CGCACAAAGACGAACCCUUUA___CAUUGCUCUAUUAUCGCU ...............(((......)))..................................... ( -3.60 = -3.10 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:04 2011