| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,624,749 – 12,624,813 |
| Length | 64 |
| Max. P | 0.995747 |
| Location | 12,624,749 – 12,624,813 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 95.85 |
| Shannon entropy | 0.05651 |
| G+C content | 0.48413 |
| Mean single sequence MFE | -18.53 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12624749 64 + 22422827 CGCCGCCCAGUUUUCACCACCCAGUUCU-UAGCAACUGAAGGUGAGUGGAAAACUAGUUGCGAAU (((.((..((((((((((((((((((..-....)))))..)))).)).))))))).)).)))... ( -22.00, z-score = -3.56, R) >droSec1.super_21 378695 63 + 1102487 --CCACCCAGUUUUCACCACCCAGUUCUCUAGCAACUGAAGGUGAGUGGAAAACUAGUUGCGAAU --.((.(.(((((((((((((((((((....).)))))..)))).)).))))))).).))..... ( -16.80, z-score = -1.92, R) >droSim1.chrU 2091929 63 - 15797150 --CCACCCAGUUUUCACCACCCAGUUCUCUAGCAACUGAAGGUGAGUGGAAAACUAGUUGCGAAU --.((.(.(((((((((((((((((((....).)))))..)))).)).))))))).).))..... ( -16.80, z-score = -1.92, R) >consensus __CCACCCAGUUUUCACCACCCAGUUCUCUAGCAACUGAAGGUGAGUGGAAAACUAGUUGCGAAU ...((.(.(((((((((((((((((((....).)))))..)))).)).))))))).).))..... (-16.79 = -16.57 + -0.22)
| Location | 12,624,749 – 12,624,813 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 95.85 |
| Shannon entropy | 0.05651 |
| G+C content | 0.48413 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -22.75 |
| Energy contribution | -22.53 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.84 |
| SVM RNA-class probability | 0.995747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12624749 64 - 22422827 AUUCGCAACUAGUUUUCCACUCACCUUCAGUUGCUA-AGAACUGGGUGGUGAAAACUGGGCGGCG ...(((..(((((((((.((.((((..(((((....-..))))))))))))))))))))...))) ( -25.70, z-score = -4.02, R) >droSec1.super_21 378695 63 - 1102487 AUUCGCAACUAGUUUUCCACUCACCUUCAGUUGCUAGAGAACUGGGUGGUGAAAACUGGGUGG-- .....((.(((((((((.((.((((..(((((.......)))))))))))))))))))).)).-- ( -21.90, z-score = -2.44, R) >droSim1.chrU 2091929 63 + 15797150 AUUCGCAACUAGUUUUCCACUCACCUUCAGUUGCUAGAGAACUGGGUGGUGAAAACUGGGUGG-- .....((.(((((((((.((.((((..(((((.......)))))))))))))))))))).)).-- ( -21.90, z-score = -2.44, R) >consensus AUUCGCAACUAGUUUUCCACUCACCUUCAGUUGCUAGAGAACUGGGUGGUGAAAACUGGGUGG__ ...(((..(((((((((.((.((((..(((((.......)))))))))))))))))))))))... (-22.75 = -22.53 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:01 2011