| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,620,126 – 12,620,216 |
| Length | 90 |
| Max. P | 0.967454 |
| Location | 12,620,126 – 12,620,216 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 60.62 |
| Shannon entropy | 0.68724 |
| G+C content | 0.32704 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -7.94 |
| Energy contribution | -8.38 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967454 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12620126 90 - 22422827 -----------CUUAUGUU-AAAAUCAUCACACUUUUUCAUACAAAUUGAGCGUUGAUUUAAGCGCUCGAGAUUUUUACCGAGCGGUGAUUCACUGAUUAAA -----------........-..(((((...................(((((((((......)))))))))((...(((((....))))).))..)))))... ( -21.10, z-score = -2.53, R) >droSim1.chrX_random 3493685 90 - 5698898 -----------CCAAUGUUCCAAAUUAUGGCUCUAUUUCAUACAAAUUAAGCGUUGA-UUAAGCGCUUGAGAUUUUUACUGAGCGAUGAUUCACUGAUUAAA -----------...........((((((.((((.............(((((((((..-...)))))))))..........)))).))))))........... ( -20.40, z-score = -2.33, R) >droSec1.super_21 373789 89 - 1102487 -----------CCAAUAUU-AAAAUUAUGGCUCUUUUCCAUACAAAUUGAGCGUUGA-UUAAGCGCUUGAUAUUUUUACUGAGCGAUGAUUCACUGAUUAAA -----------........-..((((((.((((............((..((((((..-...))))))..)).........)))).))))))........... ( -20.20, z-score = -2.90, R) >droYak2.chr3L 200387 100 + 24197627 CCUAGUAUAUGCCAAUAUA-AAAAUCAUCACUUGCUGCUAUACAAAUUGAGCGGUGA-UCAAGCGCUCGAUAUUUUUAUUGUUGGGUUAUUCACUGGUGUAA .((((((((..((((((((-(((((.(((..(((........)))...(((((.(..-...).))))))))))))))).))))))..)))..)))))..... ( -23.30, z-score = -1.29, R) >droAna3.scaffold_13117 3541346 99 - 5790199 --AAAGAAAGGCUGAUUUUAAAUAUUUUUCUUUACGUUCUAAGCAAUUUAGCAAGUAAAAAGAUGUUU-UUAUCGAUAGCUCAUAACAGUUCGUUGUCGAAU --.................((((((((((..((((...(((((...)))))...))))))))))))))-...((((((((............)))))))).. ( -15.20, z-score = 0.11, R) >consensus ___________CCAAUAUU_AAAAUUAUCACUCUCUUUCAUACAAAUUGAGCGUUGA_UUAAGCGCUUGAUAUUUUUACUGAGCGAUGAUUCACUGAUUAAA ..............................................(((((((((......)))))))))................................ ( -7.94 = -8.38 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:38:00 2011