Locus 14317

Sequence ID dm3.chrX
Location 12,562,314 – 12,562,409
Length 95
Max. P 0.845407
window19708

overview

Window 8

Location 12,562,314 – 12,562,409
Length 95
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 85.65
Shannon entropy 0.21349
G+C content 0.26009
Mean single sequence MFE -17.65
Consensus MFE -11.70
Energy contribution -11.95
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.50
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.89
SVM RNA-class probability 0.845407
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12562314 95 - 22422827
AACAAUUCAAACAAUGAUGAAUUUGAUAGCUAACGUUUGAAAACGA-------------------AGCUAUUAUAAUAAAGAAGUCAUCAUCAUAAUGUAUUAUUCCACAAUUG
..........((((((((((...((((((((..((((....)))).-------------------)))))))).......(....).)))))))..)))............... ( -16.20, z-score =  -2.03, R)
>droEre2.scaffold_4690 4452414 114 + 18748788
AACAAAUCAAACAAUGAUGACUUUGAUAGCUAACGUUUCAAAACGGAGGAAAAUUACUCAGUUAUAGCUAUUAUAAUAAAGAAGUAAUCAUCAUGAUGUAUUAGUUUACACUUU
.....((((....(((((.(((((((((((((.((((....))))(((........))).....))))))))........))))).)))))..))))(((......)))..... ( -22.00, z-score =  -2.44, R)
>droSec1.super_21 316505 95 - 1102487
AACAAAUCAAACAAUGAUGAAUUUGAUAGCUAACGUUUCAAAACGA-------------------AGCUAUUAUAAUAAAGAAGUCAUCAUCAUAAUGUAUUAUUCCACAAUUU
..........((((((((((...((((((((..((((....)))).-------------------)))))))).......(....).)))))))..)))............... ( -16.20, z-score =  -2.76, R)
>droSim1.chrX_random 3472636 95 - 5698898
AACAAAUCAAACAAUGAUGAAUUUGAUAGCUAACGUUUCAAAACGA-------------------AGCUAUUAUAAUAAAGAAGUCAUCAUCAUAAUGUAUUAUUCCACAAUUU
..........((((((((((...((((((((..((((....)))).-------------------)))))))).......(....).)))))))..)))............... ( -16.20, z-score =  -2.76, R)
>consensus
AACAAAUCAAACAAUGAUGAAUUUGAUAGCUAACGUUUCAAAACGA___________________AGCUAUUAUAAUAAAGAAGUCAUCAUCAUAAUGUAUUAUUCCACAAUUU
..........((((((((((...((((((((..((((....))))....................)))))))).......(....).)))))))..)))............... (-11.70 = -11.95 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:54 2011