| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,562,134 – 12,562,251 |
| Length | 117 |
| Max. P | 0.904201 |
| Location | 12,562,134 – 12,562,251 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.18 |
| Shannon entropy | 0.26860 |
| G+C content | 0.43182 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -20.66 |
| Energy contribution | -20.54 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.904201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12562134 117 + 22422827 GGCUUACGUUUGUCACAAGAUGAUGAAUAUCAUCAUCACAUAAUUCCCCACUUAACACCAUAAAUGUUGCAGCACAGCCACACUGGCAGGGAAUUGUG-AAAAGCGGCCACACUAAAG (((...(((((.((((..(((((((.....)))))))....(((((((..(((((((.......))))).))....(((.....))).))))))))))-).))))))))......... ( -37.70, z-score = -4.71, R) >droEre2.scaffold_4690 4452224 110 - 18748788 GGUUUACGUUUAUCACAAGAUGAUAUUCAU-------ACAUAAUUCCCUACUUAACGCCAAAAGUAUUGGAGCACAGCCACACUGGCUGGGGAUUGUG-AAAAGCAGGCACACUAAAG .......((((.((((((.(((.....)))-------.......((((.........((((.....))))....(((((.....))))))))))))))-).))))............. ( -27.40, z-score = -1.96, R) >droYak2.chrX 6833985 112 + 21770863 GGCUUACGUUUAUCACAAGAUGAUAUAUUCA-----UACAUAAUUCCCCACUUAACGUCGUAAAUGUUGGAGCACAGCCACACUGGCAGCAAAAUGUG-AAAAGCGGGCACACUAAAG .(((..(((((.(((((..((((.....)))-----)..............(((((((.....))))))).((...(((.....))).))....))))-).))))))))......... ( -22.60, z-score = -0.44, R) >droSec1.super_21 316344 108 + 1102487 GGCUUACGUUUGUCACAAGAUGAUAUUCAU-------ACAUAAUUCCUUGCCUAACGUCAUAAAUGUUGCAGCACAGCCACACUGGCAGGGAAUUUUG-AAAAGCGGCCACACUAA-- ((((...(..(((((.....)))))..)..-------.((.(((((((((((.(((((.....)))))((......))......))))))))))).))-......)))).......-- ( -29.30, z-score = -2.23, R) >droSim1.chrX_random 3472462 111 + 5698898 GGCUUACGUUUGUCACAAGAUGAUAUUCAU-------ACAUAAUUCCUUGCUUAACGCCAUAAAUGUUGCAGCACAGCCACACUGGCAGGGAAUUGUGCGGAAGCGGCCACACUAAAG ((((...(..(((((.....)))))..)..-------..((((((((((((((((((.......))))).)))...(((.....)))))))))))))((....))))))......... ( -32.80, z-score = -2.11, R) >consensus GGCUUACGUUUGUCACAAGAUGAUAUUCAU_______ACAUAAUUCCCUACUUAACGCCAUAAAUGUUGCAGCACAGCCACACUGGCAGGGAAUUGUG_AAAAGCGGCCACACUAAAG .((((..(..(((((.....)))))..)..........((((((((((....((((((.....)))))).......(((.....))).))))))))))...))))............. (-20.66 = -20.54 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:53 2011