| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,549,293 – 12,549,393 |
| Length | 100 |
| Max. P | 0.539703 |
| Location | 12,549,293 – 12,549,393 |
|---|---|
| Length | 100 |
| Sequences | 9 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 67.44 |
| Shannon entropy | 0.68045 |
| G+C content | 0.47421 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -10.99 |
| Energy contribution | -11.04 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12549293 100 - 22422827 AGAUUAGAGAAUAUUGUG-------GGGAUAAAAUCGCACG-GCUGAAUUACCAAUCUUCCUGAUCACCCGAUAUUUGCCACCGACGAUUAUCUCGGGGCGACUUUCC .((((((.(((.((((((-------.((......)).)))(-(........))))).)))))))))....((...(((((.((((.(.....))))))))))...)). ( -25.80, z-score = -0.98, R) >droPer1.super_77 95049 105 + 256778 GCGGUGGAUCUGGAUCUGGAUCU--GCAUCUGUGGCAG-GGCAGGCACUCACCUAUCUUGCGUAUGACCCGAUAUUUGCCACCGACAAUUAUUUCGGGGCGACUUUCC .(((..(((((......))))).--.).......((((-(..(((......)))..)))))........))....(((((.((((........)))))))))...... ( -33.50, z-score = -0.68, R) >dp4.chrXL_group1a 3342331 105 - 9151740 GCGGUGGAUCUGGAUCUGGAUCU--GCAUCUGUGGCAG-GGCAGGCACUCACCUAUCUUGCGUAUGACCCGAUAUUUGCCACCGACAAUUAUUUCGGGGCGACUUUCC .(((..(((((......))))).--.).......((((-(..(((......)))..)))))........))....(((((.((((........)))))))))...... ( -33.50, z-score = -0.68, R) >droAna3.scaffold_13117 3463536 90 - 5790199 -----------------AUAUCU-GAUAUGGAUUUUAAUGGAAAAUACUUACCAAUCUUUCUGAUAACACGAUAUUUGCCACCGACGAUUAUCUCGGGGCGGCUUUCC -----------------.((((.-((...(((((.....((......))....))))).)).))))....((...(((((.((((.(.....))))))))))...)). ( -17.20, z-score = -0.87, R) >droEre2.scaffold_4690 4438911 101 + 18748788 AGAUUAGAACAAGUUAUG-------GGGGUAUAACCAACACGGCUCACUUACCAAUCUUCCUGAUCACCCGAUACUUGCCACCGACGAUUAUCUCGGGGCGACUUUCC .((((((....(((..((-------..((.....))..))..)))...............))))))....((...(((((.((((.(.....))))))))))...)). ( -23.71, z-score = -0.77, R) >droYak2.chrX 6820987 108 - 21770863 AGAUUAGAGCAAGUUAUGGGGGGUUGGGGUAUAAACACACGGGGUCACUUACCAAUCUUCCUGAUCACUCUAUAUUUGCCACCGACGAUUAUCUCGGGGCGACUUUCC ....(((((...((((.((((((((((.((....))....(((....))).))))))))))))))..)))))...(((((.((((.(.....))))))))))...... ( -31.70, z-score = -1.32, R) >droSec1.super_21 303593 100 - 1102487 AGAUUAGAAAAAAUUAUG-------GGGGUAAAAUCGCACC-GCUCACUUACCAAUCUUCCUGAUCACCCGAUAUUUGCCACCGACGAUUAUCUCGGGGCGACUUUCC ......((((......((-------(((((((....((...-))....))))).(((.....)))..))))....(((((.((((.(.....)))))))))).)))). ( -22.70, z-score = -0.67, R) >droSim1.chrX_random 3463824 100 - 5698898 AGAUGAGAGAGAAUUAUG-------GGGGUAAAAUCGCACC-GCUCACUUACCAAUCUUCCUGAUCACCCGAUAUUUGCCACCGACGAUUAUCUCGGGGCGACUUUCC ......(((((.....((-------(((((((....((...-))....))))).(((.....)))..))))....(((((.((((.(.....))))))))))))))). ( -26.10, z-score = -0.83, R) >droWil1.scaffold_181096 1916405 84 - 12416693 ------------------GAU-----CAUGAAUAUCAA-GAUAGCUACUUACCAAUCUUGCGUAUCACACGAUAUUUGCCACCGACUAUUAUUUCGGAGCGGUUGUCC ------------------...-----............-((((((..((..........(((((((....)))))..))..((((........))))))..)))))). ( -15.30, z-score = -0.56, R) >consensus AGAUUAGAGCAAGUUAUG_______GGGGUAAAAUCACACG_GCUCACUUACCAAUCUUCCUGAUCACCCGAUAUUUGCCACCGACGAUUAUCUCGGGGCGACUUUCC ......................................................................((...(((((.((((........)))))))))...)). (-10.99 = -11.04 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:50 2011