| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,537,097 – 12,537,184 |
| Length | 87 |
| Max. P | 0.939368 |
| Location | 12,537,097 – 12,537,184 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 68.58 |
| Shannon entropy | 0.57809 |
| G+C content | 0.41295 |
| Mean single sequence MFE | -23.06 |
| Consensus MFE | -10.41 |
| Energy contribution | -12.11 |
| Covariance contribution | 1.70 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12537097 87 - 22422827 AUUUUUGGCAUGCUUUUGCAAUG----GCAUUUCGCAGUUUUCACCCAUAUAAAUACAUAUUUAUGCCAUUUUUGGGGGUUGGAAGCUGCG .....((.(((((....)).)))----.))...((((((((((((((.(((((((....)))))))(((....)))))).))))))))))) ( -30.80, z-score = -3.96, R) >droEre2.scaffold_4690 4426512 81 + 18748788 -AUUUUGGCACGCUUUUGCAUUG----GCGUUUCGCAGUUUUUCCCCCA---UAUACA-AUUUAUACCACUC-UGGGGGAUGGAAGCUGGG -.....((.(((((........)----)))).)).((((((((((((((---......-.............-)))))))..))))))).. ( -24.81, z-score = -1.90, R) >droYak2.chrX 6814114 85 - 21770863 -AUGUUGGCAUGCUUUUGCAAUGGAUUGCGUUUCGCAGUUUUUCCCCCA---AAUA-A-AUUUAUACCACUCGUGGGGAAUGGAAGCUGCG -......(((.((((((.....((((((((...))))))))(((((((.---....-.-.............).)))))).))))))))). ( -22.61, z-score = -0.57, R) >droSec1.super_21 291729 81 - 1102487 -AUUUUGGCAUGCUUUUGCAAUG----GCAUUUCGCAGUUUUCCCCCAU----AUACAUAUUUAUACCA-UUUUGGGGGAUGGAAGCUGCG -....((.(((((....)).)))----.))...(((((((((((((((.----................-...)))))))...)))))))) ( -27.25, z-score = -2.91, R) >droSim1.chrX_random 3451891 81 - 5698898 -AUUUUGGCAUGCUUUUGCAAUG----GCAUUUCGCCGUUUUCCCCCAU----AUACAUAUUUAUACCA-UUUUGGGGGAUGGAAGCUGCG -......(((.((((((..((((----((.....)))))).(((((((.----................-...))))))).))))))))). ( -27.55, z-score = -2.80, R) >droVir3.scaffold_12723 1944410 69 - 5802038 AUUUUGGGCGCACCUUUUCAAGCAA--ACAUGGAGCUACUUUAUAUACU-----UAUAUUUUCAAGCAAAGAUUUA--------------- (((((..((((.((...........--....)).)).....((((....-----)))).......)).)))))...--------------- ( -5.36, z-score = 1.22, R) >consensus _AUUUUGGCAUGCUUUUGCAAUG____GCAUUUCGCAGUUUUCCCCCAU____AUACAUAUUUAUACCA_UUUUGGGGGAUGGAAGCUGCG .......(((......)))..............((((((((((((((...........................)))))...))))))))) (-10.41 = -12.11 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:49 2011