| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,522,686 – 12,522,779 |
| Length | 93 |
| Max. P | 0.505236 |
| Location | 12,522,686 – 12,522,779 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 59.08 |
| Shannon entropy | 0.81653 |
| G+C content | 0.57625 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -11.43 |
| Energy contribution | -10.41 |
| Covariance contribution | -1.01 |
| Combinations/Pair | 1.76 |
| Mean z-score | -0.75 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12522686 93 + 22422827 ---------GGUUCCAGAGCCUAUAUCCAGUUGCGUAUCGGUCAUGGCCAAUAGCUCGUCAAGUUCAUCAGGUUCAGCUGCUGAGGCAGCAAUUGGUUUUUC ---------((((....)))).....((((((((.....(((....)))........(((....(((.(((......))).)))))).))))))))...... ( -24.40, z-score = -0.96, R) >droSim1.chrX 9593965 93 + 17042790 ---------GGGUCCAGAGCCUAUACCCAGUUGCGUAUCGGUCAUGGCCAAUAGCUCGUCAAGUUCAUCGGGUUCAGCUGCUGAGGCAGCAACUGGUUUUUC ---------((((.....))))....((((((((((.(((((...(((....((((((..........))))))..)))))))).)).))))))))...... ( -29.20, z-score = -1.23, R) >droYak2.chrX 6799470 102 + 21770863 GGGUCCUACGGGUCCGGAUCCUAUAUCCAAUUGCGUAUUGGUCAUGGCCAACAGCUCGUCGAGUUCAUCGGGUUCAGCGGCAGGCGCAGCUGGUGGUUUCUC .((.((....)).))(((.((.....(((.((((((.(((((....)))))..((.(((.(((..(...)..))).)))))..)))))).))).)).))).. ( -36.60, z-score = -1.54, R) >droEre2.scaffold_4690 4412037 102 - 18748788 GGGUCCCAUGGGUCCCGAGCCUAUAUCCAGUUGCGUAUUGGUCAUGGCCAAUAGCUCGUCGAGUUCAUCGGGUUCAGCUGCAGAGGCAGCUGCUGGUUUCUC (((.((....)).)))(((((...((((....((.(((((((....))))))))).....((.....)))))).(((((((....)))))))..)))))... ( -38.80, z-score = -1.92, R) >droAna3.scaffold_13117 3429993 93 + 5790199 ---GGGUCCUAUCCCAGAGCCGAUGUCCAUCUGGGUAUUGGUCAUCGCCAGGAGUUCCUCCAACUCGUCCGGUUCGUUUUCCACGGCAGCUGGUGC------ ---(((......))).((.(((((..((....))..)))))))..(((((((((((.....)))))(((.((........))..)))..)))))).------ ( -31.50, z-score = -1.01, R) >droVir3.scaffold_12928 1106063 89 + 7717345 UUGGCCCGUGGCGAUGGUGGUCUGCGCCAGCUGCGUAUCGGUCAGCGCCAGCAGCUCGUCCAGUUCAUCGGGCGCAUCUGUGGCAGCGC------------- .(((((((..((..(((((.....)))))))..))....)))))((((((.(((..(((((........)))))...))))))).))..------------- ( -36.90, z-score = 0.34, R) >droGri2.scaffold_14853 2700889 90 - 10151454 ---UUGCCCAGCAUUUGUAGUGGCUGCCGGGGAGAUUUCGGUCAGCGCCAGCAGCUCAUCCAGCUCAUCGGGCGGUGCAUUAUUAGGUGACGC--------- ---.(((((.............(((((((..(...)..))).))))(((...((((.....)))).....))))).)))......(....)..--------- ( -27.50, z-score = 1.04, R) >consensus ___UCCC_CGGGUCCAGAGCCUAUAUCCAGUUGCGUAUCGGUCAUGGCCAACAGCUCGUCCAGUUCAUCGGGUUCAGCUGCAGAGGCAGCUGCUGGUUU_UC ................((((((.................(((....)))...((((.....))))....))))))..((((....))))............. (-11.43 = -10.41 + -1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:46 2011