Locus 14306

Sequence ID dm3.chrX
Location 12,459,512 – 12,459,596
Length 84
Max. P 0.928964
window19695

overview

Window 5

Location 12,459,512 – 12,459,596
Length 84
Sequences 3
Columns 84
Reading direction forward
Mean pairwise identity 98.41
Shannon entropy 0.02186
G+C content 0.32540
Mean single sequence MFE -17.97
Consensus MFE -18.27
Energy contribution -17.83
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 1.02
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.34
SVM RNA-class probability 0.928964
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12459512 84 + 22422827
CGAUUCGAUAAUGUUUUCUUGAUGAGGGGUAUAUUGUUGAAAGUGAUUGUUGCAUACGAGUAUAUUUGUUAGCUUAUUACAGUU
...((((((((((((..(((...)))..).))))))))))).(((((....((..(((((....)))))..))..))))).... ( -18.20, z-score =  -1.66, R)
>droSec1.super_21 214669 84 + 1102487
CGAUUCGAUGAUGUUUUCUUGAUGAGGGAUAUAUUGUUGAAAGUGAUUGUUGCAUACGAGUAUAUUUGUUAGCUUAUUACAGUU
...(((((..((((.(((((....))))).))))..))))).(((((....((..(((((....)))))..))..))))).... ( -18.30, z-score =  -1.57, R)
>droSim1.chrX 9567064 84 + 17042790
CGAUUCGAUGAUGUUUUCUUGAUGAGGGGUAUAUUGUUGAAAGUGAUUGUUGCAUACGAGUAUAUUUGUUAGCUUAUUACAGUU
...(((((..(((((..(((...)))..).))))..))))).(((((....((..(((((....)))))..))..))))).... ( -17.40, z-score =  -1.17, R)
>consensus
CGAUUCGAUGAUGUUUUCUUGAUGAGGGGUAUAUUGUUGAAAGUGAUUGUUGCAUACGAGUAUAUUUGUUAGCUUAUUACAGUU
...(((((((((((.(((((....))))).))))))))))).(((((....((..(((((....)))))..))..))))).... (-18.27 = -17.83 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:43 2011