| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,447,900 – 12,447,992 |
| Length | 92 |
| Max. P | 0.551128 |
| Location | 12,447,900 – 12,447,992 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 64.90 |
| Shannon entropy | 0.50680 |
| G+C content | 0.32118 |
| Mean single sequence MFE | -18.13 |
| Consensus MFE | -7.39 |
| Energy contribution | -7.76 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12447900 92 - 22422827 AAAUGAACAAAAAAAAAAUAACAUUGACAGUGCGAUCGAUAAAAGUA--UCGAUAAUAUCGAUAAUUUUAG-AAAUUAACAAGCACUGAUGUUGG------------------------ ..................((((((...((((((.(((((((....))--)))))......(.(((((....-.))))).)..)))))))))))).------------------------ ( -19.20, z-score = -3.70, R) >droSim1.chrX_random 3392137 79 - 5698898 ---------AAAUGAAAGUAGCAUCGACAAUGCGAUCGAUAAAAGCAUCUCGAUAUUAUCGAUAGAUU-------UCAGCAAGCACCGAUGCUGG------------------------ ---------.........((((((((....(((.((((((((...(.....)...)))))))).(...-------.).))).....)))))))).------------------------ ( -19.10, z-score = -1.46, R) >droSec1.super_21 203579 89 - 1102487 ---AAAUUAACAAAAAUUUAGCUUUGACAAUGCGAUCGAUAAAAAUA--UCGAUAAUAUCGAUAAUUUUAG-AUUUCAGCAAUCACCGAUGCUGG------------------------ ---..........((((((((..(((.(.(((..(((((((....))--)))))..))).).)))..))))-))))(((((........))))).------------------------ ( -16.70, z-score = -1.80, R) >droEre2.scaffold_4690 4337030 114 + 18748788 ---AAUUCAACAAGCGAGUAGCAUUGACAAUCCGAUCGAUUAAAGUA--UCGAUAAUAUCGAUAAUUUUAGAAUUUUAGCAAGCACCGAGGGUGGAAUUAUCUUGAUAAAUACUAAAUA ---..........((.....))(((((.......((((((......)--)))))....)))))...(((((.((((...((((((((...)))).......))))..)))).))))).. ( -17.51, z-score = 0.11, R) >consensus ___AAAUCAAAAAAAAAGUAGCAUUGACAAUGCGAUCGAUAAAAGUA__UCGAUAAUAUCGAUAAUUUUAG_AUUUCAGCAAGCACCGAUGCUGG________________________ ..................((((((((.(.....)(((((((...............))))))).......................))))))))......................... ( -7.39 = -7.76 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:40 2011