| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,444,683 – 12,444,792 |
| Length | 109 |
| Max. P | 0.963531 |
| Location | 12,444,683 – 12,444,792 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 86.12 |
| Shannon entropy | 0.24095 |
| G+C content | 0.42456 |
| Mean single sequence MFE | -18.26 |
| Consensus MFE | -14.34 |
| Energy contribution | -14.86 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12444683 109 + 22422827 ACCAAGCAUAACCGCAAUUAGCAAAUCCCUUGCAACAUCAACGAAGAUGACCAAGUUGGAUUUAAGCCCUAGAUUAAGUCCAGUCAAGAAUCCGACAAGCACUGACCGA .....((......)).....((......((((...((((......))))..)))).(((((((((........)))))))))(((........)))..))......... ( -20.30, z-score = -2.19, R) >droSim1.chrX_random 3388980 105 + 5698898 ACCAAGCAUAACCGCAAUUAGCAAAUCCCUUGCAACAUCAACAAAGAUGACCAAGUUGGAUUUAAACCCUAGAUUAAGUGCAGCCAAGAAUCCGACAAGCACUGA---- .............((.....((((.....))))..((((......)))).....(((((((((........................)))))))))..)).....---- ( -17.66, z-score = -1.63, R) >droSec1.super_21 200504 105 + 1102487 ACCAAGCAUAACCGCAAUUAGCAAAUCCCUUGCAACAUCAACAAAGAUGACCAAGUUGGAUUUAAACCCUAGAUUAAGUCCAGCCAAGAAUCCGACAAGCACUGA---- .....((......((.....))......((((...((((......)))).....(((((((((((........)))))))))))))))..........)).....---- ( -21.50, z-score = -3.73, R) >droYak2.chrX 6721404 87 + 21770863 ACGAAGCAUAACCGCAAUUAGCCAAUCCCUUGCAACAUCAUCAAAGAUAACCAAGUUGGAUUUGAGCCACAGAUUAAGUCCAGCCAA---------------------- .....(((.....((.....))........)))...(((......)))......(((((((((((........)))))))))))...---------------------- ( -15.12, z-score = -2.10, R) >droEre2.scaffold_4690 4333889 105 - 18748788 ACCAAGCAUAACCGCAAUUAGCAAAUCCCUUGCAACAUCAUCAAAGACAACCAAGUUGGAUUUAAACCCCAGAUUAAGUCUAGCCAAGAAUCCGACAAGCACUGA---- .............((.....((((.....)))).....................(((((((((.......((((...))))......)))))))))..)).....---- ( -16.72, z-score = -2.20, R) >consensus ACCAAGCAUAACCGCAAUUAGCAAAUCCCUUGCAACAUCAACAAAGAUGACCAAGUUGGAUUUAAACCCUAGAUUAAGUCCAGCCAAGAAUCCGACAAGCACUGA____ .....((......)).....((((.....))))..((((......)))).....(((((((((((........)))))))))))......................... (-14.34 = -14.86 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:40 2011