| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,436,474 – 12,436,579 |
| Length | 105 |
| Max. P | 0.982352 |
| Location | 12,436,474 – 12,436,579 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.52 |
| Shannon entropy | 0.38954 |
| G+C content | 0.36468 |
| Mean single sequence MFE | -29.92 |
| Consensus MFE | -15.34 |
| Energy contribution | -15.86 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12436474 105 + 22422827 CGGAGUUCGUUACACCUGUGAAGGUGUAACUAGCUUAUCUAACAAAUAGGGUUCAUUCUUACGAAAGGUAUUUAUUUUAAGCUCUUCAAAGAUACGU--ACUUUUGU------------- (((((((.(((((((((....))))))))).)))))..........(((((.....)))))))((((((((.((((((..........)))))).))--))))))..------------- ( -27.60, z-score = -2.75, R) >droEre2.scaffold_4690 4325698 103 - 18748788 CGGAGUUAUUUACGCCGGUGAAGGUGUAGCUAGCACAUCUAACAAAUAGUGCUCAUUAUUACCUAAGGUACAUAUUUUAAGCUCUAUGUACCUUAGGUAAAAU----------------- ....((((.(((((((......))))))).))))........................((((((((((((((((..........))))))))))))))))...----------------- ( -34.70, z-score = -4.44, R) >droYak2.chrX 6712798 118 + 21770863 CGAAGUUAUUUACACCUGUGAAGGUGUAGCUAGCUCACCUAACAAAUAGGGCUCAUUAUUACAUAAGGCACUUAUUAUAUGCUCUACAAAAAUAUGU--ACUUUAGUGUUGCCUCAAAUU .((.((((.((((((((....)))))))).))))))............((((.(((((.(((((((((((.........))).)).......)))))--)...)))))..))))...... ( -27.71, z-score = -1.71, R) >droSec1.super_21 192362 107 + 1102487 CGGAGUUCGUUACACCUGUGAAGGUGUAACUAGCUCACCUAACAAAUGGGGCUCAUUCUUACUAAAGGUAUUUAUUUGAUGCACUGCAAAGAAAUGUUCAUUUUUGU------------- ..(((((.(((((((((....))))))))).))))).....(((((..((((...(((((.....(((((((.....))))).))...)))))..))))...)))))------------- ( -32.60, z-score = -3.44, R) >droSim1.chrX_random 3380745 105 + 5698898 CGAAGUUCGUUACACCUGUGAAGGUGUAACUAGCUCAUCUAACAAAUGGGGCUCAUUCUUACUAAAGGUAUUUAUUUGAAGCACUGCAAAGAUAUGU--ACUUUUGU------------- .(((....(((((((((....))))))))).(((((............)))))..)))....(((((((((.(((((...((...))..))))).))--))))))).------------- ( -27.00, z-score = -2.05, R) >consensus CGGAGUUCGUUACACCUGUGAAGGUGUAACUAGCUCAUCUAACAAAUAGGGCUCAUUCUUACUAAAGGUAUUUAUUUUAAGCUCUACAAAGAUAUGU__ACUUUUGU_____________ ..(((((.(((((((((....))))))))).))))).((((.....))))...................................................................... (-15.34 = -15.86 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:39 2011